Comment on The role of wildlife (wild birds) in the global transmission of antimicrobial resistance genes

DEAR EDITOR,We read with interest the article by Wang and colleagues regarding the role of wildlife in the transmission of antimicrobial resistance (AMR) (Wang et al.,2017).Although we appreciate the efforts in reviewing this important topic,we would like to comment on some statements that we believe are not up-to-date or properly cited.The authors mentioned only two reports of Escherichia coil carrying plasmid-mediated colistin resistance gene mcr-1 in wild birds in their review.     

Response to Comment on "The role of wildlife (wild birds) in the global transmission of antimicrobial resistance genes"

DEAR EDITOR, Since our first identification of plasmid-mediated colistin resistance gene mcr-1 in 2015 (Liu et al.,2016),it has been described in human clinics,domestic animals,foods,and the environment worldwide (Schwarz & Johnson,2016).Although it is still rare,the emergence of mcr-1 in wild animals is of great concern.We summarized two previous reports on mcr-1 in wild birds from Lithuania and Argentina to describe its emergence and characteristics in wildlife and highlight the potentially important role of wild animals,particularly birds,in its global transmission (Wang et al.,2017).The first detection of mcr-1 in wildlife in Asia was identified in an extended-spectrum β-lactamase-producing Escherichia coli strain isolated from Eurasian coot (Fulica atra),which was located on a ～63 kb Incl2 plasmid,frequently associated with the global transmission of mcr-1 (Mohsin et al.,2016).     

野生鸟类对禽流感爆发与传播的影响

2003—2005年高致病性禽流感在亚洲、欧洲多个国家大范围爆发,引起了全世界的关注,并将视线集中在候鸟身上。结合最近疫情,文章对野生鸟类在禽流感爆发和传播中的作用予以简要分析。     

野生鸟类传染性疾病研究进展

由于具有独特的飞行能力和极强的地理扩散能力,鸟类活动为某些传染性疾病的快速传播和扩散带来了潜在风险.自20世纪以来,以禽霍乱、禽波特淋菌病、西尼罗河热、禽流感等为代表的鸟类疾病频繁暴发,导致为数众多的野生鸟类、家禽甚至人类死亡,给社会造成巨大的经济损失.因此,有关鸟类传染性疾病的研究已引起了国内外学者的广泛关注.从鸟类传染性疾病的生态学特征、疾病对鸟类与人类社会的影响、鸟类对疾病的传播、鸟类疾病的监测、预警和防控等方面对野生鸟类的传染性疾病研究进展进行了综述.不同疾病导致的鸟类死亡量、易感物种数量、暴发频率和地理扩散等特征差异显著.20世纪以来,疾病已成为全球生物多样性的七大威胁因子之一.疾病可能造成鸟类大量死亡,从而对鸟类种群,特别是濒危鸟类种群造成严重影响.其中,人畜共患病还会导致家禽家畜甚至人类的死亡,从而对社会产生严重的影响.野生鸟类作为多种疾病传播的媒介,其移动和迁徙可能会导致疾病的传播与扩散.开展全面的监测活动和建立疾病预警体系,对于疾病的防控具有重要意义.     

The role of birds in sustainable food production

Birds (Class Aves) are already an important source of food in most parts of the world. Only a few species have been successfully domesticated but many others are harvested from the wild. There is potential for greater use of birds as a food source. Existing domesticated species, especially galliforms, need to be better utilized. Certain new species could be brought into domestication. The efficiency and sustainability of harvesting methods for free-living birds might be improved and the harvesting of new species should be considered. These measures could be compatible with improved conservation of wild birds and their habitats, but careful planning and surveillance are essential prerequisites.     

Mites of the genus Neharpyrhynchus Fain (Acariformes, Harpirhynchidae) from Neotropical birds

Three new species of parasitic mites of the genus Neharpyrhynchus Fain (Acariformes, Harpirhynchidae) are described from Neotropical birds: Neharpyrhynchus chlorospingussp. n. from Chlorospingus pileatus (Passeriformes, Emberizidae) from Costa Rica, Neharpyrhynchus mironovisp. n. from Dacnys cayana (Passeriformes, Thraupidae) and Neharpyrhynchus tangarasp. n. from Tangara cayana (Thraupidae) both from Brazil. Neharpyrhynchus trochilinus (Fain) is recorded from 3 new host species of the family Trochilidae (Apodiformes), Panterpe insignis and Eugenes fulgens from Costa Rica, and Amazilia lactea from Brazil. Emended diagnosis of the genus and a key to species are provided; all records of Neharpyrhynchus species are summarized.     

Interspecies variation in yolk selenium concentrations among eggs of free-living birds: The effect of phylogeny

Birds deposit the trace element selenium (Se) into their eggs because an adequate supply of this micronutrient is essential for embryonic development. Although there is considerable interest in egg Se with regard to topics as diverse as poultry nutrition and environmental pollution, data on the natural levels of Se in eggs of free-living avian species are currently very limited. To address this lack of information, we measured the yolk Se concentrations in eggs of 14 avian species collected in the wild. The concentrations (ng/g wet yolk) varied from 394 to 2238, with a mean value of 1040. Values (means+/-SD) for eggs from the UK, Canada and New Zealand were, respectively, 522+/-192 (3 species), 1194+/-584 (8 species) and 1147+/-200 (3 species). However, analysis by appropriate statistical models indicates that the effect of phylogenetic relatedness among these species is so significant that it removes any effect of geographical location. In particular, species belonging to the order Passeriformes displayed significantly higher yolk Se levels than Non-Passeriforme species. In marked contrast to the free-living species, our previously published data indicate that the Se concentration in egg yolk of the domestic chicken is only about 100 ng/g wet yolk when the birds are maintained on a basal commercial diet without supplementary Se. The results reveal an extensive interspecies variation in yolk Se (across a 6-fold range) for eggs collected from the wild. Nevertheless, the Se concentrations in the yolks of all the free-living species were far higher (4-21-fold) than that achieved in the yolk of the domestic chicken consuming a standard basal diet.     

The role of vaccines in combating antimicrobial resistance (AMR) bacteria

Most pathogens have developed an intrinsic capacity to thrive by developing resistance to antimicrobial compounds utilized in treatment. Antimicrobial resistance arises when microbial agents such as bacteria, viruses, fungi, and parasites alter their behaviour to make current conventional medicines inefficient. Vaccination is one of the most effective strategies to fight antimicrobial resistance. Vaccines, unlike drugs, are less likely to produce resistance since they are precise to their target illnesses. Vaccines against infectious agents such as Streptococcus pneumoniae and Haemophilus influenzae have already been shown to reduce tolerance to antimicrobial medications; however, vaccines against some antimicrobial-resistant pathogens such as Vibrio cholerae, Salmonella typhi, Escherichia coli, nosocomial infections, and pulmonary and diarrheal disease viruses require more research and development. This paper describes vaccine roles in combatting antimicrobial resistance, quantifies the overall advantages of vaccination as an anti-antimicrobial resistance approach, analyzes existing antimicrobial vaccines and those currently under development, and emphasizes some of the obstacles and prospects of vaccine research and development.     

Game theory and the evolution of fearfulness in wild birds

When animals in a group live under predation threat, the fate of each individual depends on the way it reacts to danger, but also on the behaviour of its companions. Game theory should then help to understand the evolution of fearful behaviour in gregarious animals. To illustrate this approach, a model determines evolutionarily stable levels of fearfulness in bird flocks, assuming that flocks are the object of both predatory attacks and nonlethal disturbance. In the model, high levels of flightiness limit the risk of being killed by predators, but increase the amount of energy lost in flights during the season. The predicted levels of fearfulness are extremely variable. They depend on the respective frequencies of predatory attacks and simple disturbing events, and on the capacity of birds to detect and escape predators. These results may help to explain the variability of flightiness reported in birds.     

The role of wild birds in the spread of influenza viruses

Eggs deposited by different migrating wild bird species in pond farm areas in Hungary were examined for yolk antibodies to different variants of human A/H3N2 influenza virus. Antibodies to Victoria/75 and Texas/77 occurred in 17.9 and 32.0% of gull eggs, and 5.6 and 16.4% of common tern eggs, respectively, while antibodies to A/H1N1/77 occurred in roughly similar proportions (10.2 and 13.4%) in the eggs of both species. Infection of the gull and tern populations of given areas by human and avian influenza A viruses differed greatly in two consecutive hatching periods. While in 1978 7.6 and 1.1% of the gull and tern eggs, respectively, contained antibodies to the avian subtype Havl, no such antibodies were found in 1977. Subtype A/H3N2/Texas/77 virus was isolated from adult gulls and 1-3 weeks old gull chicks, and subtype H1N1 virus from mallard ducks. Three months before the onset of the Texas/77 epidemic, 95% of SPF chickens, and 71-81% of chickens hatched 3 months after termination of the A/H1N1/77 epidemic, had had HI, VN and SRH antibodies to the Texas/77 strain and A/H1N1/77 strains, respectively.     

广州南沙湿地公园候鸟源肠杆菌科耐药性及产超广谱β-内酰胺酶基因监测调查

[背景]耐药基因可通过水平转移在环境、动物和人体间发生转移,而远距离传播则主要通过候鸟的迁徙.耐药基因可通过水平转移和候鸟迁徙跨地区传播至禽畜和人类,引起公共卫生问题.[目的]分离广州南沙湿地公园候鸟粪便中肠杆菌科细菌,并鉴定菌种类别,研究其对常见抗生素的耐药性及携带的主要超广谱β-内酰胺酶(extended-spec...     

拟建川藏铁路(康定至巴塘段)沿线野生鸟兽的红外相机调查

野生动物调查是开展生物多样性研究和保护的基础。本研究以国家重大工程建设为契机, 于2019年3月至2020年3月, 利用红外相机技术对拟建川藏铁路(康定至巴塘段)沿线的兽类和鸟类进行了初步调查。共布设相机85台, 获得56台相机数据,累计获得20,440个相机工作日, 共获得独立有效照片3,656张, 其中野生兽类2,571张, 野生鸟类565张。记录到野生兽类与鸟类共57种, 其中兽类26种, 隶属5目12科, 鸟类31种, 隶属4目14科。国家I级重点保护野生动物有5种, 即金钱豹(Panthera pardus)、马麝(Moschus chrysogaster)、荒漠猫(Felis bieti)、黑颈鹤(Grus nigricollis)和黄喉雉鹑(Tetraophasis szechenyii), 国家II级重点保护野生动物有棕熊(Ursus arctos)、猕猴(Macaca mulatta)等18种。被IUCN评估为濒危(EN)的物种2种, 即马麝和矮岩羊(Pseudois schaeferi); 易危(VU)和近危(NT)的物种分别为7种和5种。被CITES纳入附录I、附录II和附录III的物种分别为7种、8种和4种。兽类中相对多度指数(relative abundance index, RAI)最高的为毛冠鹿(Elaphodus cephalophus, RAI = 8.366), 鸟类中相对多度指数最高的为血雉(Ithaginis cruentus, RAI = 0.861)。本研究利用红外相机对拟建川藏铁路沿线(康定至巴塘段)非保护区区域进行兽类和鸟类的调查研究, 确定了物种丰富度较高的4处区域, 为后续铁路建设中的保护措施提供了科学依据。     

The role of the persistent fruit wall in seed water regulation in Raphanus raphanistrum (Brassicaceae)

Background and Aims

Dry fruits remain around the seeds at dispersal in a number of species, especially the Brassicaceae. Explanations for this vary, but usually involve mechanisms of innate dormancy. We speculate that, instead, a persistent fruit may give additional protection through control of dehydration, to species growing in arid or Mediterranean environments where water is sporadic.

Methods

X-rays and weight measurements were used to determine the extent to which Raphanus raphanistrum seeds within mature fruits imbibe water, and germination tests determined the roles of the fruit and seed coat in seed dormancy. Rates of water uptake and desiccation, and seedling emergence were compared with and without the fruit. Finally, germinability of seeds extracted from fruits was determined after various periods of moist conditions followed by a range of dry conditions.

Key Results

Most seeds rapidly take up water within the fruit, but they do not fully imbibe when compared with naked seeds. The seed coat is more important than the dry fruit wall in maintaining seed dormancy. The presence of a dry fruit slows emergence from the soil by up to 6–8 weeks. The fruit slows the rate of desiccation of the seed to a limited extent. The presence of the fruit for a few days during imbibition somehow primes more seeds to germinate than if the fruit is absent; longer moist periods within the pod appear to induce dormancy.

Conclusions

The fruit certainly modifies the seed environment as external conditions change between wet and dry, but not to a great extent. The major role seems to be: (a) the physical restriction of imbibition and germination; and (b) the release and then re-imposition of dormancy within the seed. The ecological significance of the results requires more research under field conditions.     

Identification of fungal (Magnaporthe grisea) stress-induced genes in wild rice (Oryza minuta)

To identify fungal stress-related genes in wild rice, Oryza minuta, we constructed a subtracted library using suppression subtractive hybridization in combination with mirror orientation selection. DNA chips containing 960 randomly selected cDNA clones were applied by reverse Northern analysis to eliminate false positive clones from the library and to prescreen differentially expressed genes. In total, 377 cDNA clones were selected on the basis of their signal intensities and expression ratios. Sequence analyses of these 377 cDNA fragments revealed that 180 of them (47.7%) represented unique genes. Of these180 cDNAs, 89 clones (49.6%) showed significant homologies to previously known genes, while the remaining 91 did not match any known sequences. The putative functions of the 180 unique ESTs were categorized by aligning them with MIPS data. They were classified into seven different groups using microarray data-derived expression patterns and verified by Northern blotting.Abbreviations ER: Endoplasmic reticulum - EST: Expressed sequence tag - MIPS: Munich Information Center for Protein Sequences - MOS: Mirror orientation selection - NCBI: National Center for Biotechnology Information - omfi: Oryza minuta fungal-stress induced - PCD: Programmed cell death - PDI: Proteins disulfide isomerase - SSH: Suppression subtractive hybridization Communicated by I.S. ChungK.S. Shim and S.K. Cho contributed equally to this work.     

Population structure of the wild soybean (Glycine soja) in China: implications from microsatellite analyses

Background and Aims Wild soybean (Glycine soja), a native species of East Asia, is the closest wild relative of the cultivated soybean (G. max) and supplies valuable genetic resources for cultivar breeding. Analyses of the genetic variation and population structure of wild soybean are fundamental for effective conservation studies and utilization of this valuable genetic resource. Methods In this study, 40 wild soybean populations from China were genotyped with 20 microsatellites to investigate the natural population structure and genetic diversity. These results were integrated with previous microsatellite analyses for 231 representative individuals from East Asia to investigate the genetic relationships of wild soybeans from China. Key Results Analysis of molecular variance (AMOVA) revealed that 43·92 % of the molecular variance occurred within populations, although relatively low genetic diversity was detected for natural wild soybean populations. Most of the populations exhibited significant effects of a genetic bottleneck. Principal co-ordinate analysis, construction of a Neighbor-Joining tree and Bayesian clustering indicated two main genotypic clusters of wild soybean from China. The wild soybean populations, which are distributed in north-east and south China, separated by the Huang-Huai Valley, displayed similar genotypes, whereas those populations from the Huang-Huai Valley were different. Conclusions The previously unknown population structure of the natural populations of wild soybean distributed throughout China was determined. Two evolutionarily significant units were defined and further analysed by combining genetic diversity and structure analyses from Chinese populations with representative samples from Eastern Asia. The study suggests that during the glacial period there may have been an expansion route between south-east and north-east China, via the temperate forests in the East China Sea Land Bridge, which resulted in similar genotypes of wild soybean populations from these regions. Genetic diversity and bottleneck analysis supports that both extensive collection of germplasm resources and habitat management strategies should be undertaken for effective conservation studies of these important wild soybean resources.     

Cooperative breeding in birds: the role of ecology

Theory predicts that cooperative breeding should only occurin species in which certain individuals are constrained frombreeding independently by some peculiarity of the species' ecology.Here, we use comparative methods to examine the role of variationin ecology in explaining differences between taxa in the frequencyof cooperative breeding. We address three questions. First,does the frequency of cooperative breeding vary at just one phylogeneticlevel, or across several levels? Second, are differences inthe frequency of cooperative breeding among closely-relatedspecies correlated with ecology? Last, are ecological differencesbetween ancient lineages important in predisposing certain lineagesto cooperative breeding? We find that variation in the frequencyof cooperative breeding occurs across all phylogenetic levels,with 40% among families and 60% within families. Also, variationin the frequency of cooperative breeding between closely related speciesis associated with ecological differences. However, differencesin the frequency of cooperative breeding among more ancientlineages are not correlated with differences in ecology. Together,our results suggest that cooperative breeding is not due toany single factor, but is a two step-process: life-history predispositionand ecological facilitation. Low annual mortality predisposescertain lineages to cooperative breeding. Subsequently, changesin ecology facilitate the evolution of cooperative breedingwithin these predisposed lineages. The key ecological changesappear to be sedentariness and living in a relatively invariableand warm climate. Thus, although ecological variation is notthe most important factor in predisposing lineages to cooperativebreeding, it is important in determining exactly which speciesor populations in a predisposed lineage will adopt cooperativebreeding.     

Detection of antimicrobial activities and bacteriocin structural genes in faecal enterococci of wild animals

The production of antimicrobial activities as well as the presence of bacteriocin structural genes (entA, entB, entP, entQ, cylL, entAS-48, bac31, and entL50A/B) were studied in 140 non-selected faecal enterococcal isolates recovered from wild animals. Eight different indicator strains (including Listeria monocytogenes, Pediococcus pentosaceus, and different enterococcal species) were used for antimicrobial activity detection. Twenty-five of the 140 enterococci (18%) showed antimicrobial activity against L. monocytogenes and 33 additional isolates (24%) showed antimicrobial activity against other indicator strains, but Listeria. At least one bacteriocin structural gene was detected in 17 of the 25 enterococci with antimicrobial activity against L. monocytogenes and different combinations of entA, entB, entP, entQ, entL50A/B, and cylL genes were detected; entA and entB were the most prevalent detected genes, and they were generally associated. Bacteriocin structural genes were detected in 10 of 33 isolates with antimicrobial activity against indicator strains other than Listeria, and the cylL gene was the most prevalent one, especially in E. faecalis isolates.     

The role of uropygial gland on sexual behavior in domestic chicken Gallus gallus domesticus

Recent studies have indicated that avian social behavior is influenced by olfactory cues. During the reproductive season a change in the chemical composition of uropygial gland secretion has been reported in some species and the hypothesis that olfactory signals may be produced by this gland has been proposed. To examine this hypothesis we performed two behavioral experiments to determine whether a female’s uropygial gland produce chemical signals that stimulate mating behaviors in domestic chickens. In Experiment 1 the role of the female’s uropygial gland in male mating behavior was examined by removing and examining the female’s uropygial gland. The frequency of mounts and copulations of intact male birds with sham-operated female birds was significantly higher than with uropygial glandectomized female birds. With respect to the number of waltzing that is one of the courtship displays intact males showed no significant difference between sham-operated female birds and uropygial glandectomized female birds. In Experiment 2 the relationship between male olfaction and the female’s uropygial gland was investigated using olfactory bulbectomized male birds. The number of mounts and copulations of sham-operated male birds with sham-operated female bird was significantly higher than with uropygial glandectomized female birds. In contrast olfactory bulbectomized male birds showed no significant differences in the number of mounts and copulations between sham-operated female birds and uropygial glandectomized female birds. These results indicate that intact and sham-operated male birds prefer to mate with female birds with the uropygial gland. The number of courtship waltzing of sham-operated male birds showed no significant difference. However olfactory bulbectomized male birds significantly courted to uropygial glandectomized female birds. Summarizing our results show that while anosmic males did not have any preference both intact and sham-operated male birds chose to mate with female birds having an intact uropygial gland suggesting that mate preference involves in male olfaction and that the female’s uropygial gland acts as a source of social odor cues in domestic chickens.     

The role of small mammals and birds in transport of matter through the shore zone of lakes

An attempt was made to estimate the role of small mammals and birds in the cycling of nutrients in the littoral zone of lakes. We estimated the approximate amounts of food, organic matter and elements ingested and egested during the breeding season by waterfowl. Small mammal densities were estimated, and their movements studied between different patches of a mosaic landscape, including the lake's shore region. Studies on passerine birds were aimed at determining the territories of some species in alder forest. Special attention was paid to the range of penetration of the reed belts by forest species.