提高光滑球拟酵母乙酰辅酶A水平促进α－酮戊二酸合成

[目的]为了了解光滑球拟酵母中乙酰辅酶A含量对其碳代谢及其通量的影响.[方法]将来源于酿酒酵母中编码乙酰辅酶A合成酶ACS2基因过量表达于发酵法生产丙酮酸的生产菌株Torulopsis glabrata中,获得了一株乙酰辅酶A合成酶活性提高9.2倍(1.20 U/mg protein)的重组菌T. glabrataACS2-1.[结果]与出发菌株WSH-IP303相比,重组菌T glabrataACS2-1:(1)能以乙酸为唯一碳源在胞内积累0.94 mmol/(L·g DCW)的L酰辅酶A;(2)以葡萄糖为唯一碳源时胞内乙酰辅A浓度、α-酮戊二酸产量和Cα-KG,Cpyr是出发菌株WSH-IP303的3.22、2.05和2.52倍;(3)在葡萄糖培养基中添加4 g/L 乙酸,使乙酰辅酶A浓度、α-酮戊二酸产量和CαKG>>/Cpyr是出发菌株WSH-IP303的4.55、2.47和3.75倍,α-酮戊二酸浓度达到17.8 g/L.[结论]这一结果表明,改变细胞内关键辅因子的浓度能使碳代谢流的流向与通量发生改变,从积累丙酮酸转向过量积累α-酮戊二酸.     

基因工程法合成间苯三酚

为进一步提高生物法合成间苯三酚的效率,探究生物合成间苯三酚的分子机理以及更加高效的发酵条件和培养基成分。对来自荧光假单胞菌(Pseudomonas fluorescens)的phl D基因进行了克隆,在BL21(DE3)中重建间苯三酚的胞内合成途径,超表达多重抗药基因正向调节因子(mar A)和乙酰辅酶A羧化酶(ACCase),并分析不同碳源及培养基离子环境对间苯三酚积累量的影响。结果显示,成功构建间苯三酚胞内合成途径,产量达到450 mg/L,mar A基因能够提高工程菌对间苯三酚抵抗力,使间苯三酚产量提高到1 060 mg/L;ACCase能够提高胞内丙二酰辅酶A的含量,使间苯三酚产量提高到2 120 mg/L;葡萄糖、甘油和丙酮酸钠三种碳源的比较中,葡萄糖对合成间苯三酚最为有利,分别是甘油和丙酮酸钠的1.8倍和2.4倍;培养基中钙镁离子对间苯三酚的合成没有影响。mar A和ACCase基因的超表达能大大提高间苯三酚生物合成的效率,以葡萄糖为碳源的无钙镁培养基为间苯三酚发酵的最适培养基。     

热稳定酯酰辅酶A合成酶的异源表达及酶学特性

【目的】为寻找能合成丙酰辅酶A和丁酰辅酶A等聚酮合成前体的生物催化剂,用体外酶学实验对一个酯酰辅酶A合成酶进行了表征。【方法】利用丙二酰辅酶A合成酶作为输入序列,通过BLAST程序在Caldicellulosiruptor owensensis OL的基因组中找到1个酯酰辅酶A合成酶基因。在大肠杆菌中进行了异源表达,并通过亲和层析进行纯化。底物谱、最适反应条件、稳定性和动力学参数通过体外酶学实验进行表征,而定点突变则用于活性中心的氨基酸残基的分析。【结果】该酶具有较好的底物宽泛性,可识别丙酸、丁酸、2-甲基丙酸、戊酸、3-甲基丁酸、2-甲基丁酸以及环己甲酸等一系列单酸。反应最适温度为30°C,最适p H为7.0。70°C保温8 h后仍有45%的活性残留,表明该酶相对比较稳定。通过活性中心3个位点的定点突变可以改变酶的底物特异性。【结论】C.owensensis OL来源的酯酰辅酶A合成酶是潜在的生物催化剂,可以用于聚酮前体的合成。     

东湖假单胞菌HYS中的精氨酸琥珀酰转移酶途径缺失对秀丽隐杆线虫毒性的影响

【背景】东湖假单胞菌HYS是本实验室从武汉东湖水域中分离并鉴定的一株高产铁载体细菌,HYS菌株对秀丽隐杆线虫具有较强毒性。前期研究发现HYS中编码精氨酸琥珀酰转移酶基因(argS)的插入突变可导致其对线虫毒性明显减弱。【目的】探究argS基因功能及其如何参与细菌毒性,为后续深入研究HYS菌株的毒性机制提供理论依据。【方法】采用生物信息学比对、遗传分析和生理生化实验确认argS基因的生物学功能及其参与的精氨酸琥珀酰转移酶(arginine succinyltransferase,AST)途径与细菌毒性的关系。【结果】生物信息学比对结果显示argS编码精氨酸琥珀酰转移酶,其蛋白序列与铜绿假单胞菌中精氨酸琥珀酰转移酶β亚基具有高达88%的相似度;缺失argS导致菌株不能利用精氨酸作为唯一碳源进行生长;精氨酸脱羧酶(arginine decarboxylase,ADC)、精氨酸脱氢酶(argininedehydrogenase,ADH)以及精氨酸脱亚胺酶(argininedeiminase,ADI)途径中关键基因缺失菌株均可正常利用精氨酸作为唯一碳源,且对线虫并无明显毒性减弱现象;添加外源精氨酸导致菌株对线虫的减毒效果更加明显,且菌株产铁载体能力显著下降。【结论】东湖假单胞菌HYS中AST途径可以通过影响菌株铁载体合成来影响其对秀丽隐杆线虫的毒性,本研究为深入了解假单胞菌精氨酸代谢和致病性机制提供了新依据。     

提高光滑球拟酵母乙酰辅酶A水平促进a-酮戊二酸合成

【目的】为了了解光滑球拟酵母中乙酰辅酶A含量对其碳代谢及其通量的影响。【方法】将来源于酿酒酵母中编码乙酰辅酶A合成酶ACS2基因过量表达于发酵法生产丙酮酸的生产菌株Torulopsis glabrata中,获得了一株乙酰辅酶A合成酶活性提高9.2倍(1.20 U/mg protein)的重组菌T. glabrata ACS2-1。【结果】与出发菌株WSH-IP303相比,重组菌T. glabrata ACS2-1：(1)能以乙酸为唯一碳源在胞内积累0.94 mmol/(L·g DCW)的乙酰辅酶A;(2)以葡萄糖为唯一碳源时胞内乙酰辅酶A浓度、a-酮戊二酸产量和Ca-KG/Cpyr是出发菌株WSH-IP303 的3.22、2.05和2.52倍;(3)在葡萄糖培养基中添加4 g/L乙酸,使乙酰辅酶A浓度、a-酮戊二酸产量和Ca-KG/Cpyr是出发菌株WSH-IP303的4.55、2.47和3.75倍,a-酮戊二酸浓度达到17.8 g/L。【结论】这一结果表明,改变细胞内关键辅因子的浓度能使碳代谢流的流向与通量发生改变,从积累丙酮酸转向过量积累a-酮戊二酸。     

产姜黄素大肠杆菌工程菌的构建

姜黄素是姜科植物的特征性成分,具有重要的药理活性。文中利用姜黄素生物合成关键酶β-酮酰辅酶A合酶(Diketide-CoA synthase,DCS)基因和姜黄素合酶(Curcumin synthase,CURS)基因构建非天然融合基因DCS::CURS,并将其与4-香豆酰辅酶A连接酶(4-coumarate coenzyme A ligase,4CL)和乙酰辅酶A羧化酶(Acetyl coenzyme A carboxylase,ACC)基因共同引入大肠杆菌Escherichia coli,构建由阿魏酸合成姜黄素的工程大肠杆菌,利用LB培养基和改良的M9培养基进行两步发酵。通过对生长培养阶段诱导蛋白表达方法和发酵培养阶段接种菌体量、培养基组成及发酵培养时间等条件的优化,并在发酵培养阶段加入大孔吸附树脂降低产物在培养液中的累积等方法,姜黄素的合成产率达到386.8mg/L。本研究首次将非天然融合基因DCS::CURS用于合成姜黄素工程菌的构建,得到了姜黄素产率较高的大肠杆菌菌株,为后续通过进一步复杂的代谢网络优化、构建姜黄素合成能力更强的工程菌提供参考。     

刺芹侧耳不同发育时期的转录组差异分析

为了探讨刺芹侧耳子实体生长发育时期的基因表达变化,本文利用高通量测序技术对刺芹侧耳不同发育时期（菌丝期、原基期、子实体时期）进行RNA-Seq分析,在转录水平上解析差异表达基因在刺芹侧耳生长发育过程中的作用和功能。KEGG功能富集显示,菌丝期差异表达基因主要富集在碳代谢和氨基酸代谢中,其中三羧酸循环中编码柠檬酸合酶、乌头酸水合酶、异柠檬酸脱氢酶、琥珀酰辅酶A合成酶、琥珀酸脱氢酶、苹果酸脱氢酶的基因表达量均上调,说明碳代谢和氨基酸代谢是菌丝时期的主要能量来源;原基期上调的差异表达基因主要富集在脂肪酸代谢,其中RT-PCR定量结果显示原基期编码脂肪酸合酶的基因和编码脂酰辅酶A合成酶的基因下调,编码超氧化物酶的基因和编码过氧化氢酶的基因上调,表明脂肪酸代谢和抗氧化酶对刺芹侧耳原基期维持机体的稳定和生物应激方面起着重要作用。子实体时期上调的差异表达基因主要富集在剪接体、类固醇的生物合成以及AMPK信号通路中,说明环境因子对子实体时期有一定的影响。     

基于前体供给途径遗传改造提高褐黄孢链霉菌纳他霉素的产量

纳他霉素(natamycin)是一种高效、广谱、安全的抗真菌剂,广泛应用于食品防腐与医药领域。纳他霉素可由多种链霉菌发酵产生。它是以乙酰辅酶A、丙二酰辅酶A及甲基丙二酰辅酶A为前体经Ⅰ型聚酮合酶(polyketide synthase,PKS)催化合成的多烯大环内酯类化合物。本研究以纳他霉素产生菌——褐黄孢链霉菌为研究材料,分别对不同前体分子供给途径中的关键酶进行过表达,并确定影响纳他霉素产量的关键前体供给途径。研究结果发现：通过过表达乙酰辅酶A合成酶(acetyl-CoA synthase,ACS)加强乙酰辅酶A合成途径,以及通过过表达甲基丙二酰辅酶A变位酶(methylmalonyl-CoA mutase,MCM)加强甲基丙二酰辅酶A合成途径,重组菌株纳他霉素产量分别比野生型菌株提高了44.19%和20.51%。共过表达ACS和MCM,重组菌株纳他霉素产量获得进一步提升(达1123.34mg/L),比野生型菌株提高了66.29%。上述发现为通过前体代谢工程的策略构建纳他霉素工业高产菌株提供了参考,也为其他聚酮类天然产物高产工程菌株的构建提供了借鉴。     

强化乙酰辅酶A供应对裂殖壶菌合成二十二碳六烯酸的影响

细胞液中乙酰辅酶A的持续供应是脂肪酸高效积累的必要条件。考虑到甲羟戊酸和脂肪酸合成途径共用相同的前体乙酰辅酶A,抑制甲羟戊酸途径可能促使更多的乙酰辅酶A流向脂肪酸合成。通过添加前体物质或/和甲羟戊酸途径酶的抑制剂以强化乙酰辅酶A的供应,即在裂殖壶菌发酵起始或/和后期添加乙酸、发酵起始添加甲羟戊酸途径酶的抑制剂辛伐他汀或柠檬酸、发酵起始同时添加乙酸和辛伐他汀或柠檬酸并考察其对裂殖壶菌合成二十二碳六烯酸 (DHA)的影响,结果发现发酵起始同时添加6mmol/L的乙酸和1μmol/L的辛伐他汀时,DHA产量最高,达到13.21g/L,比对照提高了46.61%。     

谷氨酸代谢调控及hemA过表达促进大肠杆菌血红素合成

【背景】大肠杆菌(Escherichia coli)以谷氨酸为前体经C5途径合成有限的血红素。【目的】探究胞内谷氨酸代谢及谷氨酰-tRNA还原酶基因(hem A)过表达对5-氨基乙酰丙酸(5-Aminolevulinic Acid,ALA)和血红素合成的影响。【方法】通过Red同源重组敲除与谷氨酸代谢有关的mscS与aroG,构建hemA表达载体并导入基因缺失菌株中。【结果】mscS单敲除或mscS与aroG双敲除对菌体生长无显著影响。与出发菌株相比,单敲除与双敲除菌株的谷氨酸含量均有所增加,ALA含量略微下降,血红素含量分别增加了11.6%和35.7%。在双敲除菌株中进一步过表达hemA后,胞内血红素含量增至47.603μmol/L。【结论】通过调控谷氨酸代谢流量与过表达hemA可促进血红素的合成,该结果为增强C5途径的血红素合成提供了新的思路。     

5-aminolevulinic acid biosynthesis in Escherichia coli coexpressing NADP-dependent malic enzyme and 5-aminolevulinate synthase

5-aminolevulinate (ALA) synthase (E.C. 2.3.1.37), which mediates the pyridoxal phosphate-dependent condensation of glycine and succinyl-CoA, encoded by the Rhodobacter sphaeroides hemA gene, enables Escherichia coli strains to produce ALA at a low level. To study the effect of the enhanced C4 metabolism of E. coli on ALA biosynthesis, NADP-dependent malic enzyme (maeB, E.C. 1.1.1.40) was coexpressed with ALA synthase in E. coli. The concentration of ALA was two times greater in cells coexpressing maeB and hemA than in cells expressing hemA alone under anaerobic conditions with medium containing glucose and glycine. Enhanced ALA synthase activity via coupled expression of hemA and maeB may lead to metabolic engineering of E. coli capable of large-scale ALA production.     

Extracellular 5-aminolevulinic acid production by Escherichia coli containing the Rhodopseudomonas palustris KUGB306 hemA gene

The Rhodopseudomonas palustris KUGB306 hemA gene codes for 5-aminolevulinic acid (ALA) synthase. This enzyme catalyzes the condensation of glycine and succinyl-CoA to yield ALA in the presence of the cofactor pyridoxal 5'- phosphate. The R. palustris KUGB306 hemA gene in the pGEX-KG vector system was transformed into Escherichia coli BL21. The effects of physiological factors on the extracellular production of ALA by the recombinant E. coli were studied. Terrific Broth (TB) medium resulted in significantly higher cell growth and ALA production than did Luria-Bertani (LB) medium. ALA production was significantly enhanced by the addition of succinate together with glycine in the medium. Maximal ALA production (2.5 g/l) was observed upon the addition of D-glucose as an ALA dehydratase inhibitor in the late-log culture phase. Based on the results obtained from the shake-flask cultures, fermentation was carried out using the recombinant E. coli in TB medium, with the initial addition of 90 mM glycine and 120 mM succinate, and the addition of 45 mM D-glucose in the late-log phase. The extracellular production of ALA was also influenced by the pH of the culture broth. We maintained a pH of 6.5 in the fermenter throughout the culture process, achieving the maximal levels of extracellular ALA production (5.15 g/l, 39.3 mM).     

表达浑球红细菌hemA基因生产5-氨基乙酰丙酸的研究

5-氨基乙酰丙酸（5-aminolevulinate acid,ALA）在农业,工业,医药业具有广泛的应用。ALA由5-氨基乙酰丙酸合酶（5-aminolevulinate acid synthase, ALAS）催化产生,其生物合成受终产物血红素的反馈抑制。本研究克隆一种浑球红细菌的hemA基因,序列分析其与已报道的基因具有96％的同源性,蛋白质编码区域也发生改变,并利用生物信息学软件进行同源关系的分析。采用大肠杆菌重组技术,构建表达载体pET28a—hemA,表达了有活性的浑球红细菌（Rhodobacter sphaeroides）的ALAS,研究了IPTG诱导和PH对研究ALAS的影响,同时分析了重组菌株合成ALA的能力,测定胞外产量。结果表明,在PH6．5,30mmol／L琥珀酸和60mmol／L甘氨酸培养条件下,胞外ALA的最大合成量达到669mg／L。     

Hyperproduction of poly(4-hydroxybutyrate) from glucose by recombinant Escherichia coli

ABSTRACT: BACKGROUND: Poly(4-hydroxybutyrate) [poly(4HB)] is a strong thermoplastic biomaterial with remarkable mechanical properties, biocompatibility and biodegradability. However, it is generally synthesized when 4-hydroxybutyrate (4HB) structurally related substrates such as gamma-butyrolactone, 4-hydroxybutyrate or 1,4-butanediol (1,4-BD) are provided as precursor which are much more expensive than glucose. At present, high production cost is a big obstacle for large scale production of poly(4HB). RESULTS: Recombinant Escherichia coli strain was constructed to achieve hyperproduction of poly(4-hydroxybutyrate) [poly(4HB)] using glucose as a sole carbon source. An engineering pathway was established in E. coli containing genes encoding succinate degradation of Clostridium kluyveri and PHB synthase of Ralstonia eutropha. Native succinate semialdehyde dehydrogenase genes sad and gabD in E. coli were both inactivated to enhance the carbon flux to poly(4HB) biosynthesis. Four PHA binding proteins (PhaP or phasins) including PhaP1, PhaP2, PhaP3 and PhaP4 from R. eutropha were heterologously expressed in the recombinant E. coli, respectively, leading to different levels of improvement in poly(4HB) production. Among them PhaP1 exhibited the highest capability for enhanced polymer synthesis. The recombinant E. coli produced 5.5 g L-1 cell dry weight containing 35.4% poly(4HB) using glucose as a sole carbon source in a 48 h shake flask growth. In a 6-L fermentor study, 11.5 g L-1 cell dry weight containing 68.2% poly(4HB) was obtained after 52 h of cultivation. This was the highest poly(4HB) yield using glucose as a sole carbon source reported so far. Poly(4HB) was structurally confirmed by gas chromatographic (GC) as well as 1H and 13C NMR studies. CONCLUSIONS: Significant level of poly(4HB) biosynthesis from glucose can be achieved in sad and gabD genes deficient strain of E. coli JM109 harboring an engineering pathway encoding succinate degradation genes and PHB synthase gene, together with expression of four PHA binding proteins PhaP or phasins, respectively. Over 68% poly(4HB) was produced in a fed-batch fermentation process, demonstrating the feasibility for enhanced poly(4HB) production using the recombinant strain for future cost effective commercial development.     

Cloning and expression of the succinyl-CoA synthetase genes of Escherichia coli K12

The genes encoding both subunits of the succinyl-CoA synthetase of Escherichia coli have been identified as distal genes of the suc operon, which also encodes the dehydrogenase (Elo; sucA) and succinyltransferase (E2o; sucB) components of the 2-oxoglutarate dehydrogenase complex. The newly defined genes express polypeptides of 41 kDa (sucC) and 31 kDa (sucD), corresponding to the beta and alpha subunits of succinyl-CoA synthetase, respectively. The genes are thus located at 16.8 min in the E. coli linkage map, together with the citrate synthase (gltA) and succinate dehydrogenase (sdh) genes, in a cluster of nine citric acid cycle genes: gltA-sdhCDAB-sucABCD. Four deletion strains lacking all of these citric acid cycle enzymes were characterized. The succinyl-CoA synthetase activities of strains harbouring plasmids containing the sucC and sucD genes were amplified some fourfold. Further enzymological studies indicated that expression of succinyl-CoA synthetase is coordinately regulated with 2-oxoglutarate dehydrogenase.     

Enzymatic synthesis of cytidine 5'-monophospho-N-acetylneuraminic acid

We have established an efficient method for enzymatic production of cytidine 5'-monophospho-N-acetylneuraminic acid (CMP-NeuAc) from inexpensive materials, N-acetylglucosamine (GlcNAc) and cytidine 5'-monophosphate (CMP). The Haemophilus influenzae nanE gene encoding GlcNAc 6-phosphate (GlcNAc 6-P) 2-epimerase and the Campylobacter jejuni neuB1 gene encoding N-acetylneuraminic acid (NeuAc) synthetase, both of whose products are involved in NeuAc biosynthesis, were cloned and co-expressed in Escherichia coli cells. We examined the synthesis of NeuAc from GlcNAc via GlcNAc 6-P, N-acetylmannosamine (ManNAc) 6-P, and ManNAc by the use of E. coli cells producing GlcNAc 6-P 2-epimerase and NeuAc synthetase, in expectation of biological functions of E. coli such as the supply of phosphoenolpyruvate (PEP), which is an essential substrate for NeuAc synthetase, GlcNAc phospholylation by the PEP-dependent phosphotransferase system, and dephospholylation of ManNAc 6-P. Eleven mM NeuAc was synthesized from 50 mM GlcNAc by recombinant E. coli cells with the addition of glucose as an energy source. Next we attempted to synthesize CMP-NeuAc from GlcNAc and CMP using yeast cells, recombinant E. coli cells, and H. influenzae CMP-NeuAc synthetase, and succeeded in efficient production of CMP-NeuAc due to a sufficient supply of PEP and efficient conversion of CMP to cytidine 5'-triphosphate by yeast cells.     

过量表达自身hemA基因的重组大肠杆菌发酵生产5-氨基乙酰丙酸的研究

研究了优化重组大肠杆菌产5-氨基乙酰丙酸（ALA）的条件,提高大肠杆菌发酵生产AL气的产量。在测定重组大肠杆菌GT48的生长曲线的基础上,确定诱导时间,优化摇瓶发酵条件。然后,进一步在5L发酵罐上进行间歇和流加发酵研究。摇瓶实验表明,细胞培养最佳初始pH为6．5,最佳诱导时间为稳定期前期,最佳接种量为2％,过高的葡萄糖浓度对细胞生长和产物合成均有一定的抑制作用。在5L发酵罐间歇发酵中,重组菌产ALA能力达到47．8mg／L。采用流加发酵可以进一步将产物产量提高到63．8mg／L。构建的过量表达自身的hemA基因的大肠杆菌具有较高的产ALA能力,通过发酵条件优化和采用流加发酵可以提高AL气产量。     

重组Rhodobacter sphaeroides hemA表达的调控

RhodobactersphaeroideshemA编码5氨基乙酰丙酸合酶(ALAS),催化磷酸吡哆醛依赖性琥珀酰CoA和甘氨酸缩合成ALA.将R.spaeroideshemA导入E.coli进行表达,当hemA具有与lac启动子相同的转录方向时,ALAS有活性.lac启动子与hemA之间的距离会影响ALAS在不同培养基上的表达.E.coli宿主菌对ALAS表达、ALA产量有显著影响,在实验所用6种菌株中,E.coliDH1是最佳宿主菌(P<0.05).ALAS表达还与碳源有关,琥珀酸为碳源时,重组ALAS活性最高(P<0.05),以乳酸为碳源时,ALAS活性很低.重组ALAS活性也受培养基pH值影响,pH6.5时,活性最高(P<0.05).     

5-Aminolevulinic acid production from inexpensive glucose by engineering the C4 pathway in <Emphasis Type="Italic">Escherichia coli</Emphasis>

5-Aminolevulinic acid (ALA), the first committed intermediate for natural biosynthesis of tetrapyrrole compounds, has recently drawn intensive attention due to its broad potential applications. In this study, we describe the construction of recombinant Escherichia coli strains for ALA production from glucose via the C4 pathway. The hemA gene from Rhodobacter capsulatus was optimally overexpressed using a ribosome binding site engineering strategy, which enhanced ALA production substantially from 20 to 689 mg/L. Following optimization of biosynthesis pathways towards coenzyme A and precursor (glycine and succinyl-CoA), and downregulation of hemB expression, the production of ALA was further increased to 2.81 g/L in batch-fermentation.