基于ITS序列探讨法落海的系统分类学地位

为研究法落海的系统分类地位,检测了法落海以及当归属和独活属共12种代表植物的核糖体DNA ITS序列,并结合GenBank中独活属4种代表植物的ITS序列,以羌活属的羌活(Notopterygium incisum)作为外类群,应用序列特征、遗传距离与系统树分析等方法对法落海的系统分类地位进行了分析。结果表明,依据不同的ITS区序列会得出不同甚至截然相反的结论:若依据ITS1序列,法落海应该归属到当归属;若依据ITS2序列,法落海应该归属到独活属。进一步分析法落海与当归属、独活属植物ITS区序列的碱基组成时发现,法落海在ITS1区拥有当归属植物的序列特征,而其ITS2区拥有独活属植物的序列特征。综上分析,支持法落海是介于当归属与独活属之间的一个分类群的系统分类观点。     

模糊聚类分析在中国伞形科当归亚族分类中的应用

针对伞形科前胡族当归亚族上属间界线划分的分歧,采用模糊聚类分析方法,在形态方面以属为分类单位,定量阐明了属间亲缘关系。化学方面,以裂解－气相色谱信息为分类依据肉获得的２７个种的数据揭示了当归亚族中属间的分类关系,结果表明,当归属和在中国分布的山芹属与广义当归属类群相近,并显示了东北长鞘当归和骨缘当归是一个较特殊的类群。     

东亚与北美当归属花粉形态的比较研究

对东亚与北美当归属（ＡｎｇｅｌｉｃａＬ．）７２种植物的花粉形态特征进行了观察,表明当归属的花粉为一多类型的类群,包含伞形科全部６种花粉类型,说明该属既是一个古老的属,同时又是在发展中不断演化的属。东亚和北美的共有种表明两地区的当归属十分近缘。从两地区存在着古老的姊妹群推断它们共同起源于白垩纪到老第三纪。中国的四川和北美的西北部同为当归属的起源和演化中心。花粉特征还表明当归属的近缘属山芹属（ＯｓｔｅｒｉｃｕｍＭａｘｉｍ．）为一自然的分类群     

trnK基因5′端内含子区序列在榆科(广义)系统发育研究中的应用

本文测定了广义榆科 Ulmaceae s．l．及其近缘类群的trn K基因5′端内含子区序列。在尝试利用该内含子区进行榆科系统发育研究的同时,探讨了其在植物系统学研究中的应用前景。利用PAUP软件进行的系统发育分析仅得到1棵最简约树。该简约树的树长为665步,其一致性指数(CI)和保持性指数(RI)分别为0.7714和0.7965。分析结果表明：广义榆科为多系群;狭义榆科Ulmaceae s．str．为荨麻目rticales其他类群的姊妹群;大麻科Cannabacea嵌在朴科Celtidacea中,即朴科为一并系群;系统位置有争议的2个属——白颜树属Gironniera和糙叶树属 Aphananthe与朴科类群聚为一支。本研究还表明trnK基因5′端内含子区序列分析在植物较低分类等级(如近缘属间,属下种间)的系统发育研究中具有很好的应用前景。     

伞形科山芹属叶表皮微形态特征研究

利用扫描电镜技术对伞形科山芹属(Ostericum Hoffm.)9种2变种(21居群)植物叶表皮微形态特征进行了观察分析。结果显示:山芹属植物叶片上表皮表面均较平滑,细胞轮廓清晰或不清晰,若细胞轮廓可见则为多边形与不规则形;初级蜡质纹饰为较密集的粗(细)条状,部分种类具有单层或双层脊状二级纹饰或有颗粒状或分枝状附属结构;下表皮亦有类似蜡质条状纹饰,均匀分布或集中在气孔周围或凹凸部位,气孔器形状多为椭圆形(偶见梭形),内外拱盖表面粗糙或光滑。上述研究表明,山芹属叶片微形态特征具有良好的种内稳定性和种间多样性,尤其是初级纹饰的宽度及排列密度、二级纹饰以及气孔器形状等特征,可为山芹属植物种间和种下的近缘类群亲缘关系与分类修订提供形态学依据。     

基于5个基因片段的野胡麻属系统位置研究

对单种属野胡麻属(原隶属于广义玄参科)及其可能近缘类群广泛取样,选择合适外类群,通过对4个叶绿体基因联合数据(trnL-F、rps16、rbcL、rps2)、核基因ITS片段、叶绿体基因与核基因ITS片段联合数据,进行最大简约法和贝叶斯法分析,探讨野胡麻属在科级系统位置及其与近缘类群系统发育关系。结果表明,所有系统树都支持野胡麻属先和肉果草属构成姐妹群关系,叶绿体基因联合系统树支持率分别为97%[Bootstrap(BS)]和100%[Posterior probability(PP)];ITS系统树支持率分别为99%(BS)和100%(PP);叶绿体基因和ITS联合系统树支持率均为100%(BS和PP)。野胡麻属、肉果草属与通泉草属一起构成一单系群,叶绿体基因联合系统树、ITS系统树、叶绿体基因和ITS联合系统树的支持率均为100%(BS和PP)。形态学证据也支持野胡麻属、肉果草属和通泉草属这3个属的近缘关系。本研究结果支持单种属野胡麻属隶属于透骨草科的通泉草亚科,与肉果草属亲缘关系最近,这两个属进而与通泉草属近缘,可能隶属于通泉草属内,与岩白翠亲缘关系较近,也可能与通泉草属互为姐妹群关系。     

基于trnL-F序列推测冰岛蓼属的系统发育

冰岛蓼属的界定一直存在争议,本实验以塔黄为外类群,采用最大简约法对冰岛蓼属及其近缘类群的trnL-F序列进行了系统发育分析,结果表明:(1) 冰岛蓼(Koenigia islandica)和大铜钱叶蓼(Polygonum forrestii)为姊妹群,自展分析的支持率为100%,因此,大铜钱叶蓼应归于冰岛蓼属;(2) 冰岛蓼和分叉蓼组植物聚在一起,自展支持率为99%,说明它们之间有很近的亲缘关系.     

不同种源何首乌的ITS序列分析及其亲缘关系研究

采用PCR直接测序法,测定了10个种源何首乌的核糖体DNA ITS区序列,并结合GenBank中相关植物的ITS序列(以萹蓄Polygonu maviculare为外类群),应用遗传距离与系统树分析法对不同种源何首乌的亲缘关系进行了分析。结果表明:(1)ITS1序列长度为195bp,G C含量为69.23%~72.31%,ITS2序列长度为189bp,G C含量为77.25%~80.95%,序列间遗传分化距离为0.00175~0.04945;(2)10个种源何首乌构成2个分支,广西田阳种源自成一支,与其它种源亲缘关系较远;(3)结合形态、分布与化学成分,支持将田阳何首乌作为何首乌的一个变种——棱枝何首乌。     

基于ITS 序列探讨沙棘属植物的系统发育关系

对分布于青海境内的中国沙棘、肋果沙棘和西藏沙棘的ITS区进行扩增和序列分析,并以胡颓子科胡颓子属沙枣为外类群,对胡颓子科沙棘属15种植物的ITS序列进行聚类分析, 探讨沙棘属各植物的亲缘关系.结果表明： 3种沙棘属植物的ITS区长度为600～605 bp,其中,ITS-1区为201～203 bp,5.8S为166～167 bp,ITS-2区为232～236 bp.核苷酸分析显示,3种沙棘属植物的ITS区存在丰富的变异位点.聚类分析表明,棱果沙棘种的2个亚种——棱果沙棘和理塘沙棘为2个不同种,江孜沙棘与柳叶沙棘之间的亲缘关系较近,而与中国沙棘亲缘关系较远;沙棘种下9个亚种间的聚类结果与形态学分类差异较大.
     

国产堇菜属的分子系统学研究

利用基于ITS序列的分子系统学对国产堇菜属(Viola L.)进行了系统发育重建,选择Hybanthus concolor和鳞隔堇(Scyphellandra pierrei)作为外类群,对国产堇菜属植物54种1亚种共66个序列进行分析。分子系统树中获得强烈支持的中国堇菜属属下组级分类群有Sect.Viola、Sect.Diffusae、Sect.Bilobatae、Sect.Vaginatae。Subgen.Melanium与Sect.Viola和Sect.Trigonocarpae聚在一起,说明它们的亲缘关系较近,但Sect.Trigonocarpae支获得的支持率较低。分子系统树证实了Subgen.Dischidium与Subgen.Chamaemelanium的近缘关系,但不支持根据距的长短将Subgen.Dischidium划分为Sect.Longicalcaratae和Sect.Brevicalcaratae的处理。而Pinnatae类群应该作为Sect.Adnatae下的一个亚组处理。根据分子系统发育和形态学特征对V.lucens、V.magnifica、V.dissecta、V.yunnanensis等的分类地位进行了重新评价。     

前胡族花粉外壁超微结构及其系统学意义

报道了前胡族(Peucedaneae Drude)当归亚族(Angelicinae Drude)、阿魏亚族(Ferulinae Drude)和环翅芹亚族(TordyliinaeDrude)等3亚族18属18种植物的花粉外壁表面和内部的超微结构.根据花粉外壁超微结构资料,论述了18种及其所在属的系统位置.对现时尚存疑的问题,诸如当归亚族中的山芹属(Ostericum Hoffm.)等7属(种),经分析认为统归于当归属(Angelica L.)不恰当;阿魏亚族中的球根阿魏(Schumannia turcomanica Kuntze)、伊犁芹(Talassiatransiliensis(Herd.)Korov.)、胀果芹(Phlojodicarpus villosus(Turcz.ex Fisch.et Mey.)Turcz.ex Ledeb.)等属的代表种显示其外壁演化程度相差甚大,应以与阿魏属(Ferula L.)分别独立为宜;环翅芹亚族(Tordyliinae Drude)中大瓣芹属(Semenovia Regel et Herd.)与独活属(Heracleum L.)的代表种其外壁演化程度相距甚远,也以分立为宜.     

前胡族花粉外壁超微结构及其系统学意义(英文)

Transmission electron microscopy (TEM) observation of pollen grains of 18 species belongingto 18 respective genera of the tribe Peucedaneae Drude revealed distinct ultrastructural difference in thepollen exine, including the thickness and features of rectum, columnar layer, foot layer and endexine. Thesystematic position of those 18 species are re-evaluated based on their ultrastructural characteristics ofpollen exine observed in this study. Seven genera related to Angelica L. in Angelicinae Drude have beendeduced to genus Angelica L. For example, Osterfcum grosseserratum (Maxim.) Kitagawa was changed toAngelica L. by some authors, but it differs from Angelica sinensis (Oliv.) Diels in having well developedtectum which is thicker than the columnar layer and foot layer. Its columnar layer is quite well-developedwith long and branched columellae. Besides its surface is tuberculated. Evidently, its development exceedsthat of Angelica sinensis. However, it is only a moderate evolutional species in its genus, and the Angelicasinensis accounts as the most advanced species in Angelica Diels, thus, placing genus Ostencum Hoffm.in Angelica L is not suitable, it may be more appropriate to keep its original position. In addition, Ferulaakitschkensis B. Fedtsch. ex K.-Pol. differs greatly from those of Talassia transiliensis (Herd.) Korov. andSchumannia turcomnnia Kuntze, because of its very well-developed columnar layer, being about four tofive times thicker than the total of tectum and foot layer, tuberculated tectum surface and complicatedstructure of columnellae. As another species Heracleum forrestJ‘iWolff also differs from Semenovia rubtzovii(Schischk.) Monden. in having an even thickness of exine and well-developed columnar layer, it seemssuitable that they should also be treated as two independent genera.     

Phylogenetic relationships among species of Hypochaeris (Asteraceae, Cichorieae) based on ITS, plastid trnL intron, trnL-F spacer, and matK sequences

Nuclear internal transcribed spacer (ITS) regions and chloroplast trnL intron and trnL/trnF spacer and matK sequences were used from 86 accessions to assess relationships among 31 European and South American species of Hypochaeris plus 18 representatives of related genera of tribe Cichorieae. The ITS tree shows high resolution compared to that of the maternally inherited trnL intron, trnL/F spacer, and matK sequences. The ITS and the combined tree reveal clades that agree well with sections of the genus established previously on morphological and cytological grounds, except for H. robertia, which groups with Leontodon helveticus and L. autumnalis. Monophyly of species of Hypochaeris from South America is strongly supported by both ITS and the joint matrix of ITS, trnL, and matK data. European species lie basal to South American taxa, which suggests that species in South America evolved from a single introduction from European progenitors and not from H. robertia as suggested previously. Low levels of sequence divergence among South American taxa suggest a pattern of rapid speciation, in contrast to much greater divergence among European representatives. Different species of Leontodon form two different clades that are also supported by chromosome numbers and morphology. Both nuclear and chloroplast markers suggest that Helminthotheca, Leontodon, and Picris are closely related to each other as well as to Hypochaeris.     

Phylogenetic utility of the internal transcribed spacers of nuclear ribosomal DNA in plants: an example from the compositae.

The internal transcribed spacer (ITS) region of 18-26S nuclear ribosomal DNA was sequenced in 12 representatives of the Compositae subtribe Madiinae and two outgroup species to assess its utility for phylogeny reconstruction. High sequence alignability and minimal length variation among ITS 1, 5.8S, and ITS 2 sequences facilitated determination of positional homology of nucleotide sites. In pairwise comparisons among Madiinae DNAs, sequence divergence at unambiguously aligned sites ranged from 0.4 to 19.2% of nucleotides in ITS 1 and from 0 to 12.9% of nucleotides in ITS 2. Phylogenetic relationships among ITS sequences of Hawaiian silversword alliance species (Argyroxiphium, Dubautia, and Wilkesia) and California tarweed taxa in Adenothamnus, Madia, Raillardella, and Raillardiopsis are highly concordant with a chloroplast DNA-based phylogeny of this group. Maximally parsimonious trees from ITS and chloroplast DNA data all suggest (a) origin of the monophyletic Hawaiian silversword alliance from a California tarweed ancestor, (b) closer relationship of the Hawaiian species to Madia and Raillardiopsis than to Adenothamnus or Raillardella, (c) paraphyly of Raillardiopsis, a segregate of Raillardella, and (d) closer relationship of Raillardiopsis to Madia and the silversword alliance than to Raillardella. These findings indicate that the ITS region in plants should be further explored as a promising source of nuclear phylogenetic markers.     

从线粒体16S rDNA序列探讨绒螯蟹类的系统发生关系

测定了绒螯蟹类各物种的线粒体16SrDNA部分片段的序列,构建了NJ树、ML树和MP树。序列歧异数据比较和各系统发生树都支持新绒螯蟹属(Neoeriocheir)为一个独立的属。在3种系统发生树中,直额绒螯蟹(Eriocheir recta)都是绒螯蟹属(Eriocheir)所有其它成员的姐妹群,并且广东珠江1只直额绒螯蟹标本的16SrDNA部分序列与台湾产台湾绒螯蟹(Eriocheir formasa)的相应序列相同。这些结果不支持平绒螯蟹属(Platyeriocheir)是一个有效的属,并表明E．formosa是E．recta的同物异名。绒螯蟹属(Eriocheir)所有其它成员聚为一个单系的分支,支持中华绒螯蟹、合浦绒螯蟹与日本绒螯蟹属于同一个物种Eriocheir japonica。16SrDNA部分序列的比对表明,产于台湾的日本绒螯蟹的此段序列与合浦绒螯蟹的相同,产于崇明岛的和产于美国旧金山海湾的中华绒螯蟹的此段序列与中华绒螯蟹单元型B的序列相同。     

Determination of the anamorph of Cordyceps sinensis inferred from the analysis of the ribosomal DNA internal transcribed spacers and 5.8S rDNA

The anamorph determination of Cordyceps sinensis remains problematic due to the lack of clear links between the sexual and conidial forms of the fungus. In this study, we applied molecular approaches to analyze the genetic variation of Cordyceps sinensis and its allies to identify the anamorph-teleomorph connection. The sequences of the internal transcribed spacers (ITS1 and ITS2) and 5.8S ribosomal RNA gene of Cordyceps sinensis (teleomorph) collected from Qingzang plateau (altitude over 4000m), Tibet and several related asexual conidial forms were determined. The sequence comparison showed that Cordyceps sinensis was most closely related to Hirsutella sinensis, and was clearly divergent from Paecilomyces sinensis, Stachybotrys sp. or Tolypocladium sp.; distance values, estimated according to Kimura two-parameter models between Cordyceps sinensis and Hirsutella sinensis, were extremely low (<0.02), whereas distance values between Cordyceps sinensis and Paecilomyces sinensis, Stachybotrys sp. and Tolypocladium sp. were 0.34, 0.21 and 0.25, respectively. Taken together, Hirsutella sinensis and Cordyceps sinensis are the different stages of the life cycle stages of the same organism. Hirsutella sinensis is therefore the anamorph of Cordyceps sinensis, rather than Paecilomyces sinensis or other species. The possible reasons as to why different taxa can be obtained when culturing Cordyceps sinensis are also discussed.