Dynamics of the internal soil nitrogen cycles under moder and mull forest floor types on a slope in a <Emphasis Type="Italic">Cryptomeria japonica</Emphasis> D. Don plantation

To examine the influence of microbial carbon (C) availability on the internal soil nitrogen (N) cycles under moder and mull forest floor types within the same slope sequence, surface mineral soils (0–5cm depth) taken at upper (moder-type forest floor) and lower (mull-type forest floor) positions on a slope in a Cryptomeria japonica D. Don plantation were incubated for 300days. During the incubation, changes in net and gross N transformations, the organic C and N pools, and microbial respiration were monitored. Despite relatively small differences in net N mineralization in both soils, very rapid rates of gross N transformations were found in mull soil during the initial 15days of the experiment. A rapid net nitrification occurred after days 150 and 100 in moder and mull soils, respectively, presumably because of decreased microbial C availability. However, a rapid net nitrification also occurred in the mull soil during the initial 15days when microbial C availability was high, and gross nitrification was detected in both soils, except at day 0 in the moder soil. Changes in gross N transformations and in organic C and N pools over the experiment suggested that the start of rapid net nitrification might be influenced not only by microbial C availability, but also by the microbial availability of N relative to C.     

Effect of mercuric chloride on carbon mineralization in soils

Summary The short and long-term effects of mercuric chloride amendment of five surface soils from southeastern Montana on carbon mineralization was studied. Short-term radiorespirometric studies utilizing a glucose substrate indicated Hg levels greater than 40 g/g soil were required for significant inhibition in all soils tested. Under chronic exposure conditions, levels from 0.1 to greater than 100 g Hg/g soil proved necessary for inhibition.     

Nitrogen dynamics in alpine ecosystems of the northern Caucasus

Net N mineralization, nitrification, microbial biomass N and ¹⁵N natural abundance were studied in a toposequence of representative soils and plant communities in the alpine zone of the northern Caucasus. The toposequence was represented by (1) low-productive alpine lichen heath (ALH) of wind-exposed ridge and upper slope; (2) more productive Festuca varia grassland (FG) of middle slope; (3) most productive Geranium gymnocaulon/Hedusarum caucasicummeadow (GHM) of lower slope; (4) low-productive snowbed community (SBC) of the slope bottom. N availability, net N mineralization and nitrification were higher in soils of alpine grassland and meadow of the middle part of the toposequence compared with soils of lichen heath and snowbed community of extreme habitats in the alpine zone. There was no correlation between intensities of N transformation processes and favorable (low soil acidity, low C/N ratio, long vegetation period, relatively high temperature, absence of hydromorphic features) and unfavorable (opposite) factors, indicating that the intensity of N mineralization and nitrification in the alpine soils is controlled by a complex combination of these factors. Potential net N mineralization and nitrification in alpine soils determined in the short-term laboratory incubation were considerably higher than those determined in the long-term field incubation. The differences of potential nitrification between soils of various plant communities did not correspond to the field determined pattern indicating the importance of on-site climatic conditions for control of nitrification in high mountains. The result of comparison of N transformation potentials in incubated and native soils indicated that nitrification potential was significantly increased after long-term soil incubation. It means that net nitrification determined in the field was probably overestimated, especially in the meadow soils. A soil translocation experiment indicated that low temperature was an important factor limiting net N mineralization and nitrification in alpine soils: net N mineralization and especially nitrification increased when alpine soils were translocated into the subalpine zone and mean annual temperature increased by about 3°C. Additional N input increased N availability (NH₄ ⁺-N) and potential nitrification in soils of the lower part of the toposequense (GHM and SBC), and potential net N mineralization in two soils of extreme habitats (ALH and SBC). A positive correlation was found between soil ¹⁵N and net N mineralization and nitrification; the relative ¹⁵N enrichment was characteristic of grassland and meadow ecosystems. ¹⁵N of total soil N pool increased during the field mineralization experiment; there was a positive tendency between the change in ¹⁵N and net N mineralization and nitrification, however the relationship was not significant. Foliar ¹⁵N of dominant plant species varied widely within community, however, a tendency of higher foliar ¹⁵N for species growing on the soils with higher net N mineralization, nitrification and ¹⁵N was observed.     

Effects of mild winter freezing on soil nitrogen and carbon dynamics in a northern hardwood forest

Overwinter and snowmelt processes are thought to be critical to controllersof nitrogen (N) cycling and retention in northern forests. However, therehave been few measurements of basic N cycle processes (e.g.mineralization, nitrification, denitrification) during winter and littleanalysis of the influence of winter climate on growing season N dynamics.In this study, we manipulated snow cover to assess the effects of soilfreezing on in situ rates of N mineralization, nitrification and soilrespiration, denitrification (intact core, C₂H₂ – based method),microbial biomass C and N content and potential net N mineralization andnitrification in two sugar maple and two yellow birch stands with referenceand snow manipulation treatment plots over a two year period at theHubbard Brook Experimental Forest, New Hampshire, U.S.A. The snowmanipulation treatment, which simulated the late development of snowpackas may occur in a warmer climate, induced mild (temperatures >–5 °C) soil freezing that lasted until snowmelt. The treatmentcaused significant increases in soil nitrate (NO₃ ^–)concentrations in sugar maple stands, but did not affect mineralization,nitrification, denitrification or microbial biomass, and had no significanteffects in yellow birch stands. Annual N mineralization and nitrificationrates varied significantly from year to year. Net mineralization increasedfrom 12.0 g N m^–2 y^–1 in 1998 to 22 g N m^–2 y^–1 in 1999 and nitrification increased from 8 g N m^–2 y^–1 in 1998 to 13 g N m^–2 y^–1 in 1999.Denitrification rates ranged from 0 to 0.65 g N m^–2 y^–1. Ourresults suggest that mild soil freezing must increase soil NO₃ ^– levels by physical disruption of the soil ecosystem and not by direct stimulation of mineralization and nitrification. Physical disruption canincrease fine root mortality, reduce plant N uptake and reduce competitionfor inorganic N, allowing soil NO₃ ^– levels to increase evenwith no increase in net mineralization or nitrification.     

Changes in density, biomass, seed production and soil seed banks of the non-native invasive plant, Chromolaena odorata, along a 15 year chronosequence

The non-native invasive plant Chromolaena odorata (Asteraceae) was studied at 6 sites, with a chronosequence of ages from <1 to 15 years, at St Lucia, South Africa. C. odorata density, biomass, seed production and soil seed banks were quantified in three microsites: sun, semi-shade and shade. C. odorata density decreased with invasion age, apparently as a self-thinning process. Biomass per unit area and seed production/plant increased over the first 10 years, but declined greatly at 15 years. C. odorata plants grew larger and had much greater seed production in the sun relative to semi-shade, with small plants producing few if any seeds in the shade. Seed production in the sun varied from 2000 (<1-year old site) to 260000 (10 year) seeds m^–2 annum^–1. About 20–46% of seeds produced were germinable and showed the same trend with age of invasion, but was particularly low after 15 years. Assessment of soil seed banks immediately prior to seed production (seed 10 months old), indicates that about 5–10% of seeds in the sun and 11–22% in the shade were still germinable, resulting in germinable seed densities of 12–385 and 158–511 m^–2, respectively (excluding the 15-year old site). A greenhouse trial showed that burial of seeds, relative to those at the surface, and provision of less water, significantly improved seed persistence in the soil, while light intensity had no effect. Control of C. odorata is difficult due to rapid attainment of reproductive maturity, large production of wind-dispersed seeds and a short-term persistent seed bank. An integrated control strategy either excluding fire (coastal forest sites) or using fire prior to seed release in July/August to kill plants and soil-stored seeds immediately prior to seed production, together with biological, chemical and/or physical control, should be explored.     

Primary lowland dipterocarp forest at Danum Valley, Sabah, Malaysia. Species composition and patterns in the understorey

The spatial distributions of species of tree 10 cm gbh were examined in two 4 ha plots and related to the local variation in topography and soil chemistry. The plots were similar in their species composition, particularly in terms of the densities of small trees, and they showed very similar edaphic characteristics. Size class distributions varied little within and between plots. Ordination of 0.25 ha subplots highlighted parallel gradients in the vegetation of both plots when the densities of trees 10 cm gbh were considered. Focusing on understorey trees in the 10-<50 cm gbh class at the 0.04 ha subplot scale showed a similar vegetation gradient in both plots closely associated with change from lower slope to ridge. No relationship with soil chemistry was found. On the ridges a special group of understorey species formed clumps and these species contributed importantly to the ordinations. Borneo has a regional history of occasionally severe droughts. It is suggested here that the observed patterns in the understorey are due to differential responses to low soil water supply, the ridges probably tending to dryness more than the lower slopes. Within the large and diverse family Euphorbiaceae, which dominates the understorey at Danum, there may be ecophysiological groupings of species. The long-term effects of disturbance interacting with local edaphic factors on forest structure and composition are discussed.     

Carbon and nutrient dynamics in relation to growth rhythm in the giant bamboo Phyllostachys pubescens

The carbon and nutrient dynamics in relation to growth rhythm in the giant bamboo Phyllostachys pubescens on Mount Jinyun, Chongqing, China, was studied during 1993–1996. Concentrations of TNC (total non-structural carbohydrates), N, P, and K all showed the same distribution pattern among organs: leaves > branches rhizomes stems roots. The rapid spring growth of new shoots noticeably reduced the concentration of TNC in the rhizomes, in which a large amount of carbohydrates was stored. The N concentration of the rhizomes did not decrease, however. Nutrient concentration of new (1st-year) leaves was significantly higher than that of old (2nd-year) leaves. Although the density of adult shoots was almost the same during 1994–1996, the low ratio of the number of adult shoots with new to that with old leaves from June 1994 to April 1995 resulted in a low TNC concentration in the rhizomes in early spring (April) 1995. This led to a low production of new shoots in the spring of 1995, their number being only ca. 10% of that in 1994 and 1996. Before old leaves were shed, a large amount of nutrients was remobilized and translocated to other plant parts to support further growth. Fertilization with NPK significantly increased the concentrations of N and P in leaves and subsequently increased the number of emerging new shoots.     

Soil nitrogen patterns induced by colonization of Polygonum cuspidatum on Mt. Fuji

Summary The spatial pattern of soil nitrogen was analyzed for a patchy vegetation formed by the colonization of Polygonum cuspidatum in a volcanic desert on Mt. Fuji. Soils were sampled radially from the bare ground to the center of the patch, and analyses were done for bulk density, water content, soil acidity, organic matter, organic nitrogen, and ammonium and nitrate nitrogen. The soils matured with succession from the bare ground through P. cuspidatum to Miscanthus oligostachyus and Aster ageratoides sites: bulk density decreased, and water content, organic matter, organic nitrogen, and ammonium nitrogen increased. Nitrate nitrogen showed the highest values at the P. cuspidatum site. Application of principal component analysis to the soil data discriminated two component factors which control the variation of soil characteristics: the first factor is related to soil formation and the second factor to nitrogen mineralization and nitrification. The effect of soil formation on nitrogen mineralization and nitrification was analyzed with a first-order kinetic model. The decreasing trends with soil formation in the ratios of mineral to organic nitrogen and of nitrate to ammonium nitrogen could be accounted for by the higher activity of immobilization by microorganisms and uptake by plants in the more mature ecosystem.     

Microtome sectioning causes artifacts in rhizobox experiments

Experimental data on rhizosphere characteristics at high spatial resolution are required to improve our knowledge on phytoavailability of nutrients and pollutants. In numerous studies, sectioning using refrigerated microtomes has been employed to obtain thin soil layers at defined distances from the root surface. In this study, we assessed the effect of thin slicing and freezing on soil chemical characteristics. Two experimental soils were frozen at –20°C and sliced using a refrigerated microtome. In general, chemical changes relative to the non-sliced control were more pronounced as the trim thickness (thickness of a single slice) decreased. Maximum increases in pH and electrical conductivity (EC) for the smallest trim thickness used (20 m) were 0.9 units and 50%, respectively. Extractable fractions of P (0.5 M NaHCO₃) K, Mg, Mn, Na and Si (1 M NH₄NO₃) increased up to 40, 91, 19, 621, 50 and 100%, respectively. Based on these results, we suggest to use a trim thickness of 200 m. Apart from slicing, freezing (a prerequisite for the microtome technique) was found to bias soil chemical parameters. To circumvent microtome-related artifacts we present a home-made slicing device as a cost-effective alternative, which allows sectioning of non-frozen rhizosphere soil employing one single slice.     

Nitrogen uptake in the Weddell Sea during late winter and spring

Summary Uptake rates of ammonium, nitrate and urea were measured during the EPOS leg 1 cruise to the Weddell Sea in October–November 1988 using the isotope ¹⁵N. Nitrate was the most important nitrogen source both for ice algae (f-ratio 0.88) and for phytoplankton in the water column (f-ratio 0.85). Indications of a gradual decrease in % new production with time were found in the outer marginal ice zone. Nitrogen uptake rates in ice algae from the sub-ice assemblage were light-limited at in situ irradiances. Significant regeneration of ammonium was found in ice algal samples only.Data presented here were collected during the European Polarstern Study (EPOS) sponsored by the European Science Foundation     

Natural abundance of 15N in soils along forest-to-pasture chronosequences in the western Brazilian Amazon Basin

We examined the natural abundance of ¹⁵N in soil profiles along two chronosequences in the western Brazilian Amazon Basin state of Rondônia, to investigate possible mechanisms for changes to soil nitrogen sources and transformations that occur as a result of land use. One chronosequence consisted of forest and 3-, 5- and 20-year-old pasture, the other of forest and 8- and 20-year-old pasture. The ¹⁵N values of surface soil and soil to 1 m depth in the native forest ranged from 9.8 to 13.6 and were higher than reported for temperate forest soils. Fractionation associated with nitrification and denitrification and selective losses of ¹⁵N-depleted nitrate, could potentially result in a strong enrichment of nitrogen in soil organic matter over the time scale of soil development in highly weathered tropical soils. Pasture surface soils were 1–3, depleted in ¹⁵N compared with forest soils. Lower ¹⁵N values in 20-year-old pastures is consistent with greater cumulative inputs of ¹⁵N-depleted atmospheric-derived nitrogen, fixed by free-living bacteria associated with planted pasture grasses in older pastures, or differential plant utilization of soil inorganic N pools with different ¹⁵N values. The pattern of ¹⁵N values following conversion of forest to agricultural use differs from the pattern in the temperate zone, where pasture or cultivated soils are typically more enriched in ¹⁵N than the forest soils from which they were derived.     

Bacterial regeneration of ammonium and phosphate as affected by the carbon:nitrogen:phosphorus ratio of organic substrates

The effect of carbonnitrogenphosphorus (CNP) ratio of organic substrates on the regeneration of ammonium and phosphate was investigated by growing natural assemblages of freshwater bacteria in mineral media supplemented with the simple organic C, N, and P sources (glucose, asparagine, and sodium glycerophosphate, respectively) to give 25 different substrate CNP ratios. Both ammonium and phosphate were regenerated when CN and NP atomic ratios of organic substrates were 101 and 161, respectively. Only ammonium was regenerated when CN and NP ratios were 101 and 10–201, respectively. On the other hand, neither ammonium nor phosphate was regenerated when CN and NP ratios were 151 and 51, respectively. In no case was phosphate alone regenerated. As bacteria were able to alter widely the CNP ratio of their biomass, the growth yield of bacteria appeared primarily dependent on the substrate carbon concentration, irrespective of a wide variation in the substrate CNP ratio.     

Temperature and moisture effects on C and N mineralization from surface applied clover residue

A better understanding of the effect of temperature (T) and moisture on soil microbial activity should improve our ability to predict N mineralization from soil organic matter and crop residues. The objective of this study was to evaluate the effects of water potential () and T on C and N mineralization from unamended Cecil loamy sand soil (clayey, kaolinitic, thermic Typic Kanhapludult) and from crimson clover (Trifolium incarnatum L.) residues applied on the soil surface. Cecil soil was packed into acrylic plastic cylinders, adjusted to -5.0, -1.5, -0.03, or -0.003 MPa, treated with clover residues on the surface or left unamended, and incubated at 10, 20, 28, or 35°C for 21 d. Headspace gas samples for CO2 and N2O determinations were taken periodically and NH3 evolved was trapped. Inorganic N in soil and residue extracts was analyzed after 21 d. When increased from -5.0 to -0.003 MPa, total CO2 evolved from unamended soil increased linearly with ln(-), whereas total CO2 evolved from clover residue increased exponentially with . In both cases the effect of was enhanced as T increased. Two-dimensional (T, ) equations were developed to describe these effects. Apparent net mineralized N from the clover residue increased with until it reached a maximum between -0.5 and -0.03 Mpa.     

Structure,composition and species diversity in an altitude-substrate matrix of rain forest tree communities on Mount Kinabalu,Borneo

We studied forest structure, composition and tree species diversity of eight plots in an environmental matrix of four altitudes (700, 1700, 2700 and 3100 m) and two types of geological substrates (ultrabasic and non-ultrabasic rocks) on Mount Kinabalu, Borneo. On both substrate series, forest stature, mean leaf area and tree species diversity (both 4.8 cm and 10 cm diameter at breast height [dbh]) decreased with altitude. The two forests on the different substrate series were similar at 700 m in structure, generic and familial composition and tree species diversity, but became dissimilar with increasing altitude. The decline in stature with altitude was steeper on the ultrabasic substrates than on the non-ultrabasic substrates, and tree species diversity was generally lower on ultrabasic substrates than on non-ultrabasic substrates at 1700 m. The forests on non-ultrabasic substrates at higher altitudes and those on ultrabasic substrates at the lower altitudes were similar in dbh versus tree height allometry, mean leaf area, and generic and familial composition at 1700 m. These contrasting patterns in forest structure and composition between the two substrate series suggested that altitudinal change was compressed on the ultrabasic substrates compared to the non-ultrabasic substrates. Tree species diversity was correlated with maximum tree height and estimated aboveground biomass, but was not with basal area, among the eight study sites. We suggest that forests with higher tree species diversity are characterized by greater biomass allocation to height growth relative to trunk diameter growth under more productive environment than forests with lower tree species diversity.     

Inhibition of nitrification in forest soil by monoterpenes

Nitrate production was detected in untreated soil of a Norway spruce (Picea abies L.) stand only after clear-cutting the stand. The aim of this study was to determine whether allelochemical inhibition of nitrification by monoterpenes played any role in inhibiting nitrification in the stand. Therefore, soils from a clear-cut plot and from a forest plot were studied. In the field, monoterpenes (mostly - and -pinenes), measured by soil microair diffusive samplers, were intensively produced in the forest plot, but not in the clear-cut plot. In the laboratory, soil samples taken from the forest plot produced only small amounts of monoterpenes, indicating that monoterpenes were mainly produced by the roots and not to great extent by the soil microbial population. The effect of a mixture of monoterpenes (seven major monoterpenes detected in the field) on net nitrification, net N mineralization and denitrification activities of soil from the clear cut plot, and on carbon mineralization of soils from both the forest and clear-cut plots, was studied in the laboratory. In both aerobic incubation experiments and in soil suspensions with excess NH4-N, nitrification was inhibited by exposure to the vapours of monoterpenes at similar concentrations at which they had been detected in forest plot. This indicates direct inhibition of nitrification by monoterpenes. Exposure to monoterpenes did not affect denitrification. However, it increased respiration activity of both soils. This could also indicate indirect inhibition of nitrification by monoterpenes, due to immobilization of mineral N. Thus it seems that monoterpenes could play a role in inhibiting nitrification in the forest soil.     

A novel antifungal from an Actinomadurae with preferential activity against the mycelial phase ofCandida albicans

Summary Sch 40873, a novel antifungal compound isolated from the fermentation broth of anActinomadura spp. was discovered in an assay designed to detect compounds with preferential activity against the invasive mycelial form ofCandida albicans. The geometric mean MIC of Sch 40873 against sevenCandida spp. in Sabouraud dextrose broth (yeast phase) was 58 g/ml and in Eagles minimum essential medium (mycelial phase) was <0.03 g/ml. Sch 40873 demonstrated slight in vivo topical activity in a hamster vaginal model.     

Improvement of functional magnetic resonance images by pretreatment of data

Functional magnetic resonance images of the brains of subjects performing the finger-tapping paradigm were made using a conventional technique. Two threshold values for the pixels were obtained by analysing pixel by pixel the distributions of the means and variances of each subject's images for 20 consecutive scans, both while performing the task and while at rest. Considerable signal improvement in the final images was achieved by removing from our data all pixels beyond these threshold values (mean 16 and variance 7).     

Applications of primary human hepatocytes in the evaluation of pharmacokinetic drug-drug interactions: Evaluation of model drugs terfenadine and rifampin

The utility of primary human hepatocytes in the evaluation of drug-drug interactions is being investigated in our laboratories. Our initial approach was to investigate whether drug-drug interactions observed in humans in vivo could be reproduced in vitro using human hepatocytes. Two model drugs were studied: terfenadine and rifampin, representing compounds subjected to drug-drug interactions via inhibitory and induction mechanisms, respectively. Terfenadine was found to be metabolized by human hepatocytes to C-oxidation and N-dealkylation products as observed in humans in vivo. Metabolism by human hepatocytes was found to be inhibited by drugs which are known to be inhibitory in vivo, Ki values for the various inhibitors were derived from the in vitro metabolism data, resulting in the following ranking of inhibitory potency: For the inhibition of C-oxidation, ketoconazole > itraconazole > cyclosporin ~ troleandomycin > erythromycin > naringenin. For the inhibition of N-dealkylation, itraconazole ketoconazole > cyclosporin naringenin erythromycin troleandomycin. Rifampin induction of CYP3A, a known effect of rifampin in vivo, was also reproduced in primary human hepatocytes. Induction of CYP3A4, measured as testosterone 6-hydroxylation, was found to be dose-dependent, treatment duration-dependent, and reversible. The induction effect of rifampin was observed in hepatocytes isolated from all 7 human donors studied, with ages ranging from 1.7 to 78 years. To demonstrate that the rifampin-induction of testosterone 6-hydroxylation could be generalized to other CYP3A4 substrates, we evaluated the metabolism of another known substrate of CYP3A4, lidocaine. Dose-dependent induction of lidocaine metabolism by rifampin is observed. Our results suggest that primary human hepatocytes may be a useful experimental system for preclinical evaluation of drug-drug interaction potential during drug development, and as a tool to evaluate the mechanism of clinically observed drug-drug interactions.     

Exotic Earthworm Invasion and Microbial Biomass in Temperate Forest Soils

Invasion of north temperate forest soils by exotic earthworms has the potential to alter microbial biomass and activity over large areas of North America. We measured the distribution and activity of microbial biomass in forest stands invaded by earthworms and in adjacent stands lacking earthworms in sugar maple-dominated forests in two locations in New York State, USA: one with a history of cultivation and thin organic surface soil horizons (forest floors) and the other with no history of cultivation and a thick (3–5 cm) forest floor. Earthworm invasion greatly reduced pools of microbial biomass in the forest floor and increased pools in the mineral soil. Enrichment of the mineral soil was much more marked at the site with thick forest floors. The increase in microbial biomass carbon (C) and nitrogen (N) in the mineral soil at this site was larger than the decrease in the forest floor, resulting in a net increase in total soil profile microbial biomass in the invaded plots. There was an increase in respiration in the mineral soil at both sites, which is consistent with a movement of organic matter and microbial biomass into the mineral soil. However, N-cycle processes (mineralization and nitrification) did not increase along with respiration. It is likely that the earthworm-induced input of C into the mineral soil created a microbial sink for N, preventing an increase in net mineralization and nitrification and conserving N in the soil profile.     

Importance of topography and soil texture in the spatial distribution of two sympatric dipterocarp trees in a Bornean rainforest

Relationships between spatial distributions and site conditions, namely topography and soil texture, were analyzed for two congeneric emergent trees, Dryobalanops aromatica and Dryobalanops lanceolata (Dipterocarpaceae), in a tropical rainforest in Sarawak, East Malaysia. A 52-ha permanent plot was divided into 1300 quadrats measuring 20m×20m; for each Dryobalanops species, the number and total basal area of trees 1cm in d.b.h. were compared among groups of quadrats with different site conditions. Because spatial distributions of both Dryobalanops and site-condition variables were aggregated, Monte-Carlo permutation tests were applied to analyze the relationships. Both single and multifactor statistical tests showed that the density and basal area distributions of the two species were significantly non-random in relation to soil texture and topographic variables. D.aromatica was significantly more abundant at higher elevations, in sandy soils, and on convex and steep slopes. In contrast, D.lanceolata preferred lower elevations and less sandy soils. In the study plot, there were very few sites (3 of 1150 quadrats tested) where the models of Hayashis method predicted the co-occurrence of the two species. These results suggest that between-species differences in habitat preferences are so large that they alone explain the spatially segregated distributions of these two species within the 52-ha study plot.