Diatoms and biomonitoring: should cell size be accounted for?

Despite the fact that biovolume calculation is a common procedure in most phytoplankton and periphyton studies, diatom community analyses are usually based on relative abundance data. In a biomonitoring context, a community metric that accounts for cell size could be of interest due to the potential differences that might exist in nutrient uptake between large and small-sized species. This paper addresses the question of whether diatom community analysis should be based on relative abundance, biovolume or cell surface. The results show that although community structure expressed as relative proportion of taxa varied according to the metric used, the ordinations conducted with each metric were similar. The explained percentage of species variance was slightly higher with the relative abundance metric compared to the metrics based on relative biovolume or cell surface area. Partial CCAs showed that each water chemistry variable generally explained a higher portion of species variance when the relative abundance was used. The analyses conducted with two size groups (small and large taxa) expressed as relative abundance and relative biovolume showed similar results. Moreover, our data showed that there is no significant relationship between diatom size and total phosphorus. According to these results, it seems that relative abundance would be the most appropriate metric to use for biomonitoring purposes. The biovolume and cell surface area calculations added substantially to the total analysis time due to the numerous measurements required, but did not improve the variance explained in community structure, and site ordinations were not significantly different. Electronic supplementary material Electronic supplementary material is available for this article at and accessible for authorised users.     

Community structure of epilithic and endolithic algae and cyanobacteria on cliffs of the Niagara Escarpment

Abstract. In order to understand how communities of rock-inhabiting micro-organisms are spatially organized, rock samples and environmental variables were collected from five cliff sites in Ontario, Canada. Algae and cyanobacteria were extracted from the epilithic zone (rock surface) and endolithic zone (subsurface) of 180 samples, and the frequency of each taxon (genus or larger) was determined. Multivariate statistical analyses were used to determine (1) the variation in community composition on different spatial scales; (2) differences in community composition between surface and subsurface; and (3) the environmental constraints of community structure. 13 taxa of cyanobacteria and 12 taxa of eukaryotic algae were identified in the endolithic zone, and 17 and 14 in the epilithic zone, respectively. The most frequent taxa were similar in both zones, but MANOVA of species frequencies showed significant differences between endolithic and epilithic communities. DCA and CCA showed that geographic-scale variation in community composition was the dominant trend in the data for both surface and subsurface. Cyanobacteria and eukaryotic algae showed a clear separation on the first ordination axis. When the geographic-scale variation was removed in a partial ordination, the separation of organisms by kingdoms disappeared and epi- and endolithic ordinations were no longer similar. Light then appeared to control the endolithic species composition, while other factors, possibly moisture-related, were suggested for the epilithic community. Despite biomass and productivity that varies mostly at scales of < 1m², we conclude here that species composition and its environmental constraints vary at small as well as larger scales.     

Structure of the Phytoplankton Community and Its Relationship to Water Quality in Donghu Lake, Wuhan, China

The phytoplankton community structure, in terms of species composition, total standing crop,and abundance of the dominant algal species, at four stations in Donghu Lake, Wuhan, China, was investigated monthly from January 1994 to December 1996. A total of 260 taxa was observed, of which Chlorophyta (106 taxa) contributed the highest portion of the total number of taxa, followed by Bacillariophyta (82 taxa) and Cyanophyta (32 taxa). The total standing crop measured by means of chlorophyll a content, cell density,and cell biovolume, as well as the abundance of the dominant species, declined in the order of Station I to Station IV. Seasonal changes of the standing crop varied greatly among the four stations. Although the cell density at the four stations showed a single peak within a year, the peak density varied from July to November, dependent on the sampling year and the station. For chlorophyll a content and cell biovolume,multiple peaks were observed at Stations I and II, but a single peak was found at Stations III and IV. The phytoplankton community structure indicated that the trophic status was the highest at Station I (most eutrophic), followed by Station II; Stations III and IV were the least trophic areas. The long-term changes in phytoplankton community structure further suggested that changes in phytoplankton community structure were correlated with water quality, and eutrophication of Donghu Lake had been aggravated since the 1950s.     

Structure of the Phytoplankton Community and Its Relationship to Water Quality in Donghu Lake, Wuhan, China

The phytoplankton community structure, in terms of species composition, total standing crop,and abundance of the dominant algal species, at four stations in Donghu Lake, Wuhan, China, was investigated monthly from January 1994 to December 1996. A total of 260 taxa was observed, of which Chlorophyta (106 taxa) contributed the highest portion of the total number of taxa, followed by Bacillariophyta (82 taxa)and Cyanophyta (32 taxa). The total standing crop measured by means of chlorophyll a content, cell density,and cell biovolume, as well as the abundance of the dominant species, declined in the order of Station I to Station Ⅳ. Seasonal changes of the standing crop varied greatly among the four stations. Although the cell density at the four stations showed a single peak within a year, the peak density varied from July to November, dependent on the sampling year and the station. For chlorophyll a content and cell biovolume,multiple peaks were observed at Stations Ⅰ and Ⅱ, but a single peak was found at Stations Ⅲ and Ⅳ. The phytoplankton community structure indicated that the trophic status was the highest at Station Ⅰ (most eutrophic), followed by Station Ⅱ; Stations Ⅲ and Ⅳ were the least trophic areas. The long-term changes in phytoplankton community structure further suggested that changes in phytoplankton community structure were correlated with water quality, and eutrophication of Donghu Lake had been aggravated since the 1950s.     

Broad‐scale patterns of invertebrate richness and community composition in temporary rivers: effects of flow intermittence

Temporary rivers are increasingly common freshwater ecosystems, but there have been no global syntheses of their community patterns. In this study, we examined the responses of aquatic invertebrate communities to flow intermittence in 14 rivers from multiple biogeographic regions covering a wide range of flow intermittence and spatial arrangements of perennial and temporary reaches. Hydrological data were used to describe flow intermittence (FI, the proportion of the year without surface water) gradients. Linear mixed‐effects models were used to examine the relationships between FI and community structure and composition. We also tested if communities at the most temporary sites were nested subsets of communities at the least temporary and perennial sites. Taxon richness decreased as FI increased and invertebrate communities became dominated by ubiquitous taxa. The number of resilient taxa (with high dispersal capacities) decreased with increased FI, whereas the number of resistant taxa (with adaptations to desiccation) was not related to FI. River‐specific and river‐averaged model comparisons indicated most FI‐community relationships did not differ statistically among rivers. Community nestedness along FI gradients was detected in most rivers and there was little or no influence of the spatial arrangement of perennial and temporary reaches. These results indicate that FI is a primary driver of aquatic communities in temporary rivers, regardless of the biogeographic species pool. Community responses are largely due to resilience rather than resistance mechanisms. However, contrary to our expectations, resilience was not strongly influenced by spatial fragmentation patterns, suggesting that colonist sources other than adjacent perennial reaches were important.     

Spatial and temporal variations in the trematode component community of the mudsnail Hydrobia ventrosa in relation to the occurrence of waterfowl as definitive hosts

The component community of larval trematodes infecting the mudsnail Hydrobia ventrosa (Montagu) was examined in coastal lagoons of the southern Baltic Sea among different host subpopulations in relation to the structure of the waterfowl community. The 10 trematode species observed represent the families Notocotylidae (1), Echinostomatidae (1 or 2), Heterophyidae (2). Monorchidae (1). Microphallidae (3 or 4), Psilostomatidae (1), and Hemiuridae (1). Eight of these species infect waterfowl as adults. The structure of the trematode communities was similar between sampling sites. Seven trematode taxa were commonly found at all sampling sites. Prevalence values of the 6 most abundant taxa, which infect birds as final hosts, were significantly different between neither sampling sites nor across year. Overall trematode prevalence in H. ventrosa fluctuated seasonally. Prevalence usually peaked in summer between July and September or October. Low prevalences were observed in late winter and early spring. In contrast, the seasonal maximum in waterfowl numbers differed between areas because of significant spatial differences in the bird community structure. The species composition of the component trematode community of H. ventrosa in the coastal lagoons of the southern Baltic Sea is more or less independent of the species composition of the waterfowl community. This independence presumably results from the lack of host specificity in most of the observed trematode species. Otherwise, the low host specificity in combination with the enormous waterfowl diversity in the coastal lagoons might explain the stability of the prevalence pattern of the component trematode community.     

Ciliate communities of a large shallow lake: Association with macrophyte beds

We investigated the influence of macrophyte composition on ciliate community structure in a large, shallow, eutrophic Lake Võrtsjärv. We hypothesized that macrophyte composition must have strong influence on the dispersal of ecologically different ciliate groups in a shallow lake and that more diverse macrophyte stands cause also a greater diversity in the ciliate community. In Võrtsjärv macrophyte distribution is spatially strongly polarized both in east–west and north–south directions in relation to abiotic factors. Phragmites australis and Myriophyllum spicatum were the most widespread species occurring in most parts of the lake. Correlation of environmental, macrophyte and planktonic ciliate variables confirmed the suggested spatial gradients. More diverse macrophyte stands supported a high species richness and abundance of epiplanktonic community but showed negative influence on the number and abundance of euplanktonic ciliate taxa. Opposite trends were found relative to the abundance of P. australis. Benthic ciliates showed a similar distribution pattern to euplanktonic taxa being most abundant in sites were the Shannon–Weaver index for macrophytes was low. Strong polarizing effect of the lake's vegetation on planktonic ciliate diversity was reflected in correlations of the number of ciliate taxa as well as the numbers of eu- and epiplanktonic taxa with geographic co-ordinates.     

Plant genetics affects arthropod community richness and composition: evidence from a synthetic eucalypt hybrid population

To examine how genetic variation in a plant population affects arthropod community richness and composition, we quantified the arthropod communities on a synthetic population of Eucalyptus amygdalina, E. risdonii, and their F1 and advanced-generation hybrids. Five major patterns emerged. First, the pure species and hybrid populations supported significantly different communities. Second, species richness was significantly greatest on hybrids (F1 > F2 > E. amygdalina > E. risdonii). These results are similar to those from a wild population of the same species and represent the first case in which both synthetic and wild population studies confirm a genetic component to community structure. Hybrids also acted as centers of biodiversity by accumulating both the common and specialist taxa of both parental species (100% in the wild and 80% in the synthetic population). Third, species richness was significantly greater on F1s than the single F2 family, suggesting that the increased insect abundance on hybrids may not be caused by the breakup of coadapted gene complexes. Fourth, specialist arthropod taxa were most likely to show a dominance response to F1 hybrids, whereas generalist taxa exhibited a susceptible response. Fifth, in an analysis of 31 leaf terpenoids that are thought to play a role in plant defense, hybrids were generally intermediate to the parental chemotypes. Within the single F2 family, we found significant associations between the communities of individual trees and five individual oil components, including oil yield, demonstrating that there is a genetic effect on plant defensive chemistry that, in turn, may affect community structure. These studies argue that hybridization has important community-level consequences and that the genetic variation present in hybrid zones can be used to explore the genetic-based mechanisms that structure communities.     

宜昌百里荒草山草坡群落物种分布的空间趋势分析

通过基于CCA的趋势面分析和空间插值方法,研究了宜昌百里荒山地草场的群落结构空间变化,以及群落结构空间趋势与主要环境因子的相关性。结果表明,该群落物种空间中的群落结构面和物理空间中的空间趋势面可以很好地吻合,说明该群落的结构由一种具有强烈空间结构化特征的机制控制。对群落结构和空间趋势影响最显著的环境因素是土壤有效磷。     

Spatio-temporal,environmental factors,and host identity shape culturable-epibiotic fungi of seaweeds in the Red Sea,Egypt

The study of fungal species diversity from marine algae is in its infancy; as now no studies have been carried out on the distribution and diversity of fungi on the surfaces of marine macroalgae where all fungal–algal interactions tend to begin. The aim of this study was to isolate and describe the culturable part of mycobiota associated with the surface of benthic marine macroalgae (epiphytic or epibiotic fungi). This is an important step in understanding their abundance, diversity and factors influencing their variability and composition. The fungal community was dominated by Ascomycetes (89%) with Eurotiales as the most abundant fungal order followed by Capnodiales, Pleosporales, and Hypocreales, while Zygomycetes was less frequent. The nature of occurrence of fungal genera on different macroalgal hosts suggests that a mix of generalists’ framework applies to fungal epiphytes of seaweeds, but the abundance of fungal taxa varied among ecological functional groups of algae, as well as macroalgal taxonomic groups, which imply host filtering. The fungal assemblages were also characterized by temporal variation with variation in temperature, pH, and salinity as the most important abiotic factors. The structure of fungal assemblages showed high beta diversity and low similarity between hosts.     

Filamentous algal communities related to pH in streams in The Trossachs, Scotland

• 1 A survey of acidified streams in the Loch Ard area of The Trossachs, Scotland, was carried out between 1986 and 1988, to determine the influence of physical and chemical factors on the distribution of benthic algae. Samples were taken on thirty-five occasions from fifteen sites on ten streams. Forty-nine operational taxa of filamentous algae were distinguished. Relative abundance of taxa in samples was scored on a seven-point scale. Estimates of standing crop were made by pigment extraction and ash-free dry weight (AFDW) determination from biomass developed on artificial substrata.
• 2 No evidence was found for seasonality in standing crop, nor for an increase in standing crop with a decrease in pH. Seasonality in relative abundance was evident for few taxa. Species richness and diversity were highly correlated with pH and correlated chemical variables.
• 3 Canonical correspondence analysis (CCA) carried out using the CANOCO program ordinates species and sites and relates them directly to environmental variables. The most important variable was found to be pH (or an acidification-related variable that is highly correlated with pH), with percentage forest cover and total oxidized nitrogen being of secondary importance. The effect of subdividing the data set, using data based on presence-absence as well as estimated relative abundance, was tested. A comparison of the effects on the distribution of site and species values on the pH vector showed that the results are robust, confirming the value of this semi-quantitative sampling method for use with a difficult algal group. It was possible to infer pH from algal community structure using CANOCO.
• 4 The pH ranking of species derived from CCA revealed that larger cell diameter taxa do not predominate at low pH, implying that reduction of invertebrate grazing was not an important determinant of algal community composition.

     

Spatial pattern of distribution of marine invertebrates within a subtidal community: do communities vary more among patches or plots?

Making links between ecological processes and the scales at which they operate is an enduring challenge of community ecology. Our understanding of ecological communities cannot advance if we do not distinguish larger scale processes from smaller ones. Variability at small spatial scales can be important because it carries information about biological interactions, which cannot be explained by environmental heterogeneity alone. Marine fouling communities are shaped by both the supply of larvae and competition for resources among colonizers—these two processes operate on distinctly different scales. Here, we demonstrate how fouling community structure varies with spatial scale in a temperate Australian environment, and we identify the spatial scale that captures the most variability. Community structure was quantified with both univariate (species richness and diversity) and multivariate (similarity in species composition) indices. Variation in community structure was unevenly distributed between the spatial scales that we examined. While variation in community structure within patch was usually greater than among patch, variation among patch was always significant. Opportunistic taxa that rely heavily on rapid colonization of free space spread more evenly among patches during early succession. In contrast, taxa that are strong adult competitors but slow colonizers spread more evenly among patches only during late succession. Our findings show significant patchiness can develop in a habitat showing no systematic environmental spatial variation, and this patchiness can be mediated through different biological factors at different spatial scales.     

High‐throughput sequencing provides insight into manipulated soil fungal community structure and diversity during temperate forest restoration

The process of community assembly in fungal communities is poorly understood and may have important implications for restoration. However, there is a shortage of data describing fungal community composition at various stages of restoration. This study describes how microbial inoculation with field‐collected soils or a commercial inoculum influenced fungal communities during temperate tree restoration. We utilized Illumina Mi‐Seq sequencing technology to examine fungal community structure in the rhizosphere soils of trees at the conclusion of one growing season. Inoculation treatment was found to be a significant determinant of fungal community structure in one of our three experimental tree species (Liriodendron tulipifera). We also found a marginally significant influence of inoculation method on fungal community structure in the rhizosphere soils of Quercus rubra, an ectomycorrhizal tree species. Importantly, within these taxa, the use of commercial inocula, while failing to lead to detectable abundances of the inoculated taxa, strongly influenced the resulting fungal community structure after 4 months in the field, relative to control trees that received no such inoculation. We observed lower abundances of Hebeloma, a potentially important ectomycorrhizal genera, in Quercus trees receiving the commercial inoculum compared with control trees; thus, the commercial inoculum might have unexpected consequences for fungal community assembly. Such unintended legacy effects of soil inoculation should be considered in ecological restoration. Furthermore, by taking a time series approach to sampling, high‐throughput sequencing approaches could be used to test the principles of ecological assembly theory, including legacy effects of taxa no longer detectable in the community.     

Ecological correlates between cladocerans and their endoparasites from permanent and rain pools: patterns in community composition and diversity

Water fleas (Cladocera) constitute a major component in freshwater food webs, with important ecosystem-level consequences. Their abundance and richness are strongly influenced by their ecology and coevolution with numerous endoparasites. We investigated how parasitism shapes cladoceran community structure and diversity. We surveyed 204 freshwater permanent and rain pools in Israel, identified all cladoceran specimens and screened them for infection. Daphniid species richness in this survey was lower than in previous surveys and the distribution pattern of the species was different, most likely due to local extinction and habitat loss. We recorded a total of 21 taxa of endoparasites, of which 13 are most likely species not yet described. Variation in parasite richness among hosts and sites could not be attributed to differences in host body size and behavioral feeding strategies. We extend the known host range and geographic distribution of eight parasites from Europe and North America (between latitudes 40° and 70°) to much southern areas (latitudes 31° and 32°) and to different climate zones (arid and semi-arid areas). In many infected populations we found co-occurrence of at least two endoparasites, and in most of these cases Daphnia individuals were found to be infected by several endoparasite species simultaneously. Such multiple infections may have important consequences for community structure as well as host?Cparasite coevolution.     

Microturbellarian species richness and community similarity among temporary pools:relationships with habitat properties

Temporary water bodies exhibit a high level of biodiversity,much of which is unique tothese habitats.Studies of microturbellarian community ecology in temporary pools are scarce,eventhough turbellarians are potentially important in organizing community structure.Moreover,therehas been virtually no documentation of microturbellarians from Israel.We examined the re-lationships between several pool properties (surface area,water depth,permanence and sedimentdepth)and microturbellarian species richness among 52 temporary pools at a single site.A total of17 taxa of microturbellarians were identi ed,of which 14 were determined to genus or species level.Richness was positively related with surface area and with maximal sediment depth,togetherexplaining 54%of the variance.In more intensive sampling of a subset of 18 pools,surface areawas the only signi cant predictor,explaining 76%of the variance.Community dissimilarity waspositively related with di erences in both surface area and permanence.We identi ed three cate-gories of pool size,each characterized by di erent turbellarian species:large pools were dominatedbyCastrada viridis andGieysztoria cuspidata ,intermediate pools byDochmiotrema limicola ,and many of the small pools byGieysztoria ornata andOlisthanella obtusa .Large pools contributed themost to regional diversity,with 11 of the 17 observed taxa.However,some species were unique tosmall pools.Thus,in order to maintain maximal regional diversity of temporary water turbellar-ians,it is important to conserve habitats containing pools of various sizes.     

Macrograzers strongly influence patterns of epiphytic assemblages in seagrass meadows

The influence of factors, both abiotic (light and nutrients) and biotic (meadow structure, herbivory and seagrass shoot length) in the abundance and distribution of epiphytes on the Mediterranean seagrass Posidonia oceanica was investigated by means of a correlational approach over a spatial scale of ca. 500 km and at two different depths (5 and 15 m). Variability was examined from the double perspective of integrative community measures (biomass, species richness and alpha-diversity) and species composition. We assessed the influence of biotic and abiotic factors on integrative community measures using multiple correlation analyses. The influence of these factors in the structure of the whole community was investigated using a distance-based RDA for a linear model. A total of 129 taxa, mostly epiphytic algae, were recorded across all sites and depths. A large part of the variability in species composition (51%) was explained by the variables investigated. In particular, variability caused by differences in grazing pressure was the most important (25%), followed by variables related to nutrient availability (11%), meadow structure (6%), light (5%) and seagrass shoot length (4%). Among integrative community variables investigated, species richness was also best explained by grazing and nutrients.     

Distance decay relationships in foliar fungal endophytes are driven by rare taxa

Foliar fungal endophytes represent a diverse and species‐rich plant microbiome. Their biogeography provides essential clues to their cryptic relationship with hosts and the environment in which they disperse. We present species composition, diversity, and dispersal patterns of endophytic fungi associated with needles of Pinus taeda trees across regional scales in the absence of strong environmental gradients as well as within individual trees. An empirical designation of rare and abundant taxa enlightens us on the structure of endophyte communities. We report multiple distance‐decay patterns consistent with effects of dispersal limitation, largely driven by community changes in rare taxa, those taxonomic units that made up less than 0.31% of reads per sample on average. Distance‐decay rates and community structure also depended on specific classes of fungi and were predominantly influenced by rare members of Dothideomycetes. Communities separated by urban areas also revealed stronger effects of distance on community similarity, confirming that host density and diversity plays an important role in symbiont biogeography, which may ultimately lead to a mosaic of functional diversity as well as rare species diversity across landscapes.     

Structural changes of vegetation and its association with microclimate in a successional gradient of low thorn forest in northeastern Mexico

Understanding how microclimate and vegetation are associated during secondary succession is of primary importance for plant conservation in the face of the increasing land cover modification. However, these patterns are still unstudied for many plant communities. This study aimed to evaluate the structure (species richness, Shannon's diversity index, Simpson´s dominance index, abundance of each species, average height of species, species cover (%), species composition, and indicator values) of a low thorn forest fragment and to analyze its relation with microclimate along a successional gradient. Four stages of succession were delimited by the analysis of Landsat images, in the state of Tamaulipas, northeast Mexico. Statistical models incorporated species richness, diversity indices, abundance, height, and cover, as variables for searching differences between stages, or to evaluate microclimate associations. A total of 70 species, 54 genera, and 27 families were determined. Height of tree layer was the most important variable for discrimination of the successional stages. Conserved areas differed floristically from other stages, associated mainly with the lowest values of wind speed originated by tree layer characteristics. A significant association between species and microclimate was found, being wind speed and relative humidity the most important variables. Some species, due to their high importance values and their patterns of association with microclimate, may be considered as key taxa for low thorn forest, which is a threatened semitropical community in northeast Mexico. Conserved and late successional areas account for climatic regulation of this plant community, and the importance of these forest patches may be considered when establishing biodiversity protection areas.

     

若尔盖高原泥炭沼泽湿地土壤细菌群落空间分布及其驱动机制

了解高原泥炭沼泽湿地生态系统土壤微生物群落结构组成、多样性及空间分布特征对认识高原湿地生态特征及演化过程至关重要。利用高通量测序技术，在局域尺度上研究了四川若尔盖高原泥炭沼泽湿地土壤细菌群落结构与多样性特征。通过进一步测定土壤及植物基本理化指标，量化采样点之间的地理距离，比较了细菌群落不同成员（稀有种和丰富种）的空间周转差异，分析了土壤环境变量和空间因子对细菌群落结构的相对贡献。结果表明：若尔盖泥炭土壤细菌群落主要由绿弯菌门（Chloroflexi）（26.25%）、变形菌门（Proteobacteria）（23.21%）、厚壁菌门（Firmicutes）（10.56%）等优势物种门类组成；土壤细菌群落结构表现出较强的空间依赖关系，群落结构相似性随采样点地理距离增加而逐渐降低，细菌群落的周转速率表现为总细菌群落 > 丰富种 > 稀有种；Mantel检验结果显示，地上生物量与细菌群落呈极显著相关性（P<0.01），其中，影响稀有种空间分布特征的环境因子还包括土壤硫含量、活性磷、Mn和土壤pH值；方差分解分析表明，局域尺度上的土壤因子对若尔盖高原泥炭沼泽土壤细菌群落构建的相对贡献大于空间因子，土壤异质性是影响微生物空间分布特征的关键因素。研究为开展高原湿地泥炭土壤微生物多样性调查及揭示微生物群落构建机制提供了重要参考。