孕烷X受体配体结合结构域蛋白晶体的X线衍射结构解析

目的:利用X线衍射技术解析孕烷X受体(PXR)配体结合结构域(LBD)蛋白晶体的3维结构。方法:对PXR蛋白LBD(130~434氨基酸残基)序列进行密码子优化并化学合成后克隆至pRSFDuet-1表达载体,再将载体导入大肠杆菌BL21(DE3),对PXR-LBD蛋白进行原核表达与分离纯化;采用晶体筛选试剂盒筛选蛋白结晶条件,采用悬滴法获得目标蛋白的晶体;对获得的蛋白晶体进行X线晶体衍射检测,并收集相关数据建立PXR-LBD的三维结构。结果:获得了PXR-LBD的高质量晶体并利用X线衍射解析了该蛋白质晶体的结构数据,使用Phenix.refine软件和COOT软件等对结构进行修正,最终获得了高分辨率的3维结构数据。结论:完成了孕烷X受体配体结合结构域蛋白晶体的X线衍射结构解析,为研究和开发PXR相关药物奠定了基础。     

Diazonium modification of Photosystem I. A specific effect on iron-sulfur Center B

Modification of chloroplast membranes with diazonium benzene sulfonate (DABS) leads to a loss of Photosystem I-dependent ferredoxin reduction but not methyl viologen reduction. EPR studies of DABS-modified membranes show no inhibition of P-700⁺ formation at cryogenic temperatures, but iron-sulfur Center A photoreduction is markedly inhibited. Iron-sulfur Center B photoreduction at physiological temperatures in DABS-modified membranes is also markedly inhibited and little Center B can be detected after dark chemical reduction. These results indicate DABS specifically modifies iron-sulfur Center B of the spinach chloroplast Photosystem I electron acceptor complex and that Center B is obligately required for the reduction of Center A at cryogenic temperatures. Possible electron transport pathways at physiological temperatures are also considered.     

瑞戈非尼抑制三阴性乳腺癌MDA-MB-231细胞增殖的研究

目的:利用裸鼠皮下成瘤动物模型及裸鼠肝脏原位多发与弥散模型,探索新型分子靶向药物瑞戈非尼对三阴性乳腺癌MDA-MB-231增殖的抑制作用,确定其分子机制。方法:培养获得人高侵袭性三阴性乳腺癌细胞MDA-MB-231,经BALB/c裸鼠皮下注射形成皮下肿瘤,或经肝门静脉注射形成肝脏多发、弥散的肿瘤模型。给予瑞戈非尼灌胃给药治疗,3周后解剖,测量肿瘤体积并称重;或进行PET/CT检测,对核素强度、散发肿瘤占肝脏面积进行定量。通过定量PCR(q PCR)实验验证上皮-间质转化标志物与转移、侵袭相关标志物的表达水平。结果:在裸鼠皮下成瘤模型以及裸鼠肝脏原位多发与弥散肿瘤模型中,瑞戈非尼隔日灌胃给药持续3周能够显著抑制MDA-MB-231的增殖;皮下肿瘤体积、重量,以及裸鼠肝脏PET/CT检测显示瑞戈非尼持续给药组的相对核素强度均明显低于对照组;q PCR实验反映出瑞戈非尼能够抑制MDA-MB-231的上皮-间质转化与转移、侵袭作用。结论:揭示了瑞戈非尼对三阴性乳腺癌细胞系MDA-MB-231的增殖抑制作用,初步探索了其分子机制,为瑞戈非尼应用于三阴性乳腺癌的治疗提供参考。     

利用长距离PCR扩增国内肠道病毒流行株基因组方法的建立和评价

目的:通过调查近年来我国肠道病毒EV-71型和柯萨奇病毒A16型流行株的全基因组序列,建立一种能够获得我国肠道病毒序列的通用扩增方法,为今后的手足口病流行病学分析、致病机理研究等打下基础。方法:收集我国近5年各地报道的肠道病毒流行株全基因组序列作为参考序列进行比对分析,在保守区设计通用引物,利用3'RACE、长距离PCR扩增及简并引物扩增肠道病毒全基因组序列,采用IonTorrentPGM二代测序仪对扩增产物进行深度测序,以对扩增方法进行验证和评价。结果:通过比对肠道病毒流行株序列设计了通用扩增引物,经二代测序实验获得了肠道病毒全基因组序列;以系列比例模拟混合病毒感染,该扩增方法能够同时获得2株肠道病毒的全基因组序列;能够完整地揭示肠道病毒重组情况。结论:建立了针对我国近年来肠道病毒流行株的通用全基因组扩增方法,在病毒培养液中肠道病毒的提取与扩增中显示了较高的灵敏度,能够反映混合病毒感染、重组病毒的情况。     

The Reincarnation of Khensur Rinpoche: The Trials of Telo Rinpoche: A Stranger in My Native Land

The Reincarnation of Khensur Rinpoche. 1991. 55 minutes. color. video by Tenzing Sonam and Ritu Sarin. For more information, contact University of California Extension. Center Media and Independent Learning, 2000 Center Street. Suite 400. Berkeley, CA 94704.
The Trials of Telo Rinpoche. 1994. 50 minutes, color. video by Tenzing Sonam and Ritu Sarin. For more information, contact University of California Extension. Center Media and Independent Learning, 2000 Center Street. Suite 400. Berkeley, CA 94704.
Stranger in My Native Land. 1998. 30 minutes, color. video by Tenzing Sonam and Ritu Sarin. For more information, contact University of California Extension. Center Media and Independent Learning, 2000 Center Street. Suite 400. Berkeley, CA 94704.     

Three-iron-sulfur centers of pea mitochondria

EPR signals of three distinct types of three-iron-sulfur center were observed in pea mitochondria: the signal of Center S-3 (low-field peak at g = 2.016), the signal of Center ISP-1 (low-field peak at g = 2.024) and the signal of the axial Center ISP-2 with two maxima, at g = 2.027 and 2.016. Succinate increases the signal amplitude of Center ISP-1 and diminishes that of Center ISP-2; malate has an opposite effect. Membrane damage enhances the effect of malate and decreases that of succinate.     

Kinetic identification of component X as P430: a primary electron acceptor of Photosystem I

Kinetics of dark recoveries of Component X, Center A, and Center B at 20 and 0 °C after a 30-s illumination were studied in membrane fragments from a blue-green alga by using low temperature electron paramagnetic resonance spectroscopy in combination with a quick-freeze method. These kinetics were compared with those obtained by spectrophotometry under the same conditions. Contrary to the currently popular view, the result strongly suggests that Component X, rather than Center A or Center B, is P430.     

The Japanese Tsukuba Primate Center for Medical Science (TPC): an outline

The facilities and activities of the Japanese Primate Center at Tsukuba, Japan are described. The Center became partially functional in 1978 and was completed in 1979. The three main aims of the Primate Center are: to quarantine newly imported primate animals, to breed, and to study them.     

丹江口库区湖北水源区不同密度马尾松人工林水源涵养能力

为了研究南水北调中线水源区汛期森林的水源涵养功能,以丹江口库区龙口林场马尾松人工林为对象,于2018年6-9月采用野外观测与室内分析相结合的方法,对高、中、低3种密度马尾松人工林,从林冠层、枯枝落叶层和土壤层进行分析,探究其丰水期水源涵养功能的林分密度效应.结果表明:(1)3种密度马尾松人工林林冠截留量为56.13~77.68 mm,且随林分密度增加林冠截留量增大,林内穿透雨量则趋势相反;(2)3种密度马尾松人工林枯落物总生物量为12.76~19.56 t·hm^-2,随着林分密度增加枯落物总生物量增大,且半分解层枯落物生物量均大于未分解层枯落物生物量;高密度枯落物总厚度最大,中密度次之,低密度最小;枯落物最大持水量为21.32~28.24 mm,有效持水量为16.82~22.51mm,且均表现为中密度>高密度>低密度;枯落物持水量、吸水速率与浸泡时间分别呈对数函数和幂函数关系式;(3)3种密度马尾松人工林O~ 30 cm土层土壤容重为1.45~ 1.54g·cm^-3,总孔隙度均值为42.18%~45.71%,土壤有效持水量为2.94~4.81 mm,且土壤容重大小为低密度>高密度>中密度,土壤总孔隙度排序则与之相反,土壤有效持水量表现为中密度>低密度>高密度;(4)3种密度马尾松人工林综合水源涵养能力为204~237.55 mm,表现为中密度>高密度>低密度.综上,丹江口库区中密度马尾松人工林水源涵养服务能力最优,建议在今后库区森林抚育过程中,合理控制林分密度.     

Thermodynamic and EPR characteristics of two ferredoxin-type iron-sulfur centers in the succinate-ubiquinone reductase segment of the respiratory chain.

Two distinct ferredosin-type iron-sulfur centers (designated as Centers S-1 and S-2) are present in the soulble succinate dehydrogenase in approximately equivalent concentrations to that of bound flavin. Both Centers S-1 and S-2 exhibit electron paramagnetic resonance absorbance in the reduced state at the same magnetic field (gz = 2.03, gy = 1.93, and gx = 1.91) with similar line shape. Center S-2 is reducible only chemically with dithionite and remains oxidized under physiological conditions. Thus, its functional role is unknown; however, thermodynamic and EPR characterization of this iron-sulfur center has revealed important molecular events related to this dehydrogenase. The midpoint potentials of Centers S-1 and S-2 determined in the soluble succinate dehydrogenase preparations are -5 +/- 15 mV and -400 +/- 15 mV, respectively, while corresponding midpoint potentials determined in particulate preparations, such as succinate-cytochrome c reductase or succinate-ubiquinone reductase, are 0 +/- 15 mV and -260 +/- 15 mV. Reconstitution of soluble succinate dehydrogenase with the cytochrome b-c1 complex is accompanied by a reversion of the Center S-I midpoint from -400 +/- 15 mV to -250 +/- 15 mV with a concomitant restoration of antimycin A-sensitive succinate-cytochrome c reductase activity. There observations indicate that, during the reconstitution process, Center S-I is restored to its original molecular environment. In the reconstitutively active succinate dehydrogenase, the relaxation time of Center S-2 is much shorter than that of S-1, thus Center S-2 spectra are well discernible only below 20 K (at 1 milliwatt of power), while the resonance absorbance of Center S-1 is detectable at higher temperatures and readily saturates below 15 K. Over a wide temperature range the power saturation of Center S-1 resonance absorbance is relieved by Center S-2 in the paramagnetic state, and the Center S-2 central resonance absorbance is broadened by Center S-1 spins, due to a spin-spin interaction between these centers. These observations indicate an adjacent location of these centers in the enzyme molecule. In reconstitutively inactive enzymes, subtle modification of the enzyme structure appears to shift the temperature dependence of Center S-2 relaxation to the higher temperature. Thus the EPR signals of Center S-2 are also detectable at higher temperature. In this system a splitting of the central peak of the Center S-2 spectrum due to spin-spin interaction was observed at extremely low temperatures, while this was not observed in reconstitutively active enzymes or in paritculate preparations. This spin-spin interaction phenomena of inactive enzymes disappeared upon chemical reactivation with concomitant appearance of the reconstitutive activity. These observations provide a close correlation between the molecular integrity of the enzyme and its physiological function.     

细胞外囊泡研究进展

由细胞释放到细胞外环境中的来源于内体和细胞膜的多样化的膜性囊泡,统称为细胞外囊泡。这些细胞外囊泡作为细胞间转运膜和可溶性蛋白、脂质、RNA的载体,代表一种重要的细胞间通讯方式。虽然很多报道证明,多种细胞释放细胞外囊泡,并且具有一定的生理意义,但是我们目前缺乏对细胞外囊泡分子机制的深入理解,在细胞外囊泡研究的方法学以及人为调控细胞外囊泡的释放等方面也存在局限性,因此使得我们对它们在体内的生理学功能和细胞外囊泡作为疾病靶标的转化医学的研究进程缓慢。在这篇综述中,该文主要从细胞外囊泡的分类、分子细胞生物学研究、生理及病生理功能、细胞外囊泡的研究方法几个方面回顾当前细胞外囊泡领域的研究进展。     

Thermodynamic and EPR characterization of iron-sulfur centers in the NADH-ubiquinone segment of the mitochondrial respiratory chain in pigeon heart.

Several iron-sulfur centers in the NADH-ubiquinone segment of the respiratory chain in pigeon heart mitochondria and in submitochondrial particles were analyzed by the combined application of cryogenic EPR (between 30 and 4.2 degrees K) and potentiometric titration. Center N-1 (iron-sulfur centers associated with NADH dehydrogenase are designated with the prefix "N") resolves into two single electron titratins with EM7.2 values of minus 380 plus or minus 20 mV and minus 240 plus or minus 20 mV (Centers N-1a and N-1b, respectively). Center N-1a exhibits an EPR spectrum of nearly axial symmetry with g parellel = 2.03, g = 1.94, while that of Center N-1b shows more apparent rhombic symmetry with gz = 2.03, gy = 1.94 and gx = 1.91. Center N-2 also reveals EPR signals of axial symmetry at g parallel = 2.05 and g = 1.93 and its principal signal overlaps with those of Centers N-1a and N-1b. Center N-2 can be easily resolved from N-1a and N-1b because of its high EM7.2 value (minus 20 plus or minus 20 mV). Resolution of Centers N-3 and N-4 was achieved potentiometrically in submitochondrial particles. The component with EM7.2 = minus 240 plus or minus 20 mV is defined as Center N-3 (gz = 2.10, (gz = 2.10, (gy = 1.93?), GX = 1.87); the minus 405 plus or minus 20 mV component as Center N-4 (gz = 2.11, (gy = 1.93?), gx = 1.88). At temperatures close to 4.2 degrees K, EPR signals at g = 2.11, 2.06, 2.03, 1.93, 1.90 and 1.88 titrate with EM7.2 = minus 260 plus or minus 20 mV. The multiplicity of peaks suggests the presence of at least two different iron-sulfur centers having similar EM7.2 values (minus 260 plus or minus 20 mV); HENCE, tentatively assigned as N-5 and N-6. Consistent with the individual EM7.2 values obtained, addition of succinate results in the partial reduction of Center N-2, but does not reduce any other centers in the NADH-ubiquinone segment of the respiratory chain. Centers N-2, N-1b, N-3, N-5 and N-6 become almost completely reduced in the presence of NADH, while Centers N-1a and N-4 are only slightly reduced in pigeon heart submitochondrial particles. In pigeon heart mitochondria, the EM7.2 of Center N-4 lies much closer to that of Center N-3, so that resolution of the Center N-3 and N-4 spectra is not feasible in mitochondrial preparations. EM7.2 values and EPR lineshapes for the other iron-sulfur centers of the NADH-ubiquinone segment in the respiratory chain of intact mitochondria are similar to those obtained in submitochondrial particle preparations. Thus, it can be concluded that, in intact pigeon heart mitochondria, at least five iron-sulfur centers show EM7.2 values around minus 250 mV; Center N-2 exhibits a high EM7.2 (minus 20 plus or minus 20 mV), while Center N-1a shows a very low EM7.2 (minus 380 plus or minus 20 mV).     

Thermodynamic and EPR characteristics of a HiPIP-type iron-sulfur center in the succinate dehydrogenase of the respiratory chain.

In addition to the two species of ferredoxin-type iron-sulfur centers (Centers S-1 and S-2), a third iron-sulfur center (Center S-3), which is paramagnetic in the oxidezed state analogous to the bacterial high potential iron-sulfur protein, has bwen detected in the reconstitutively active soluble succinate dehydrogenase preparation. Midpoint potential (at pH 7.4) of Center S-3 determined in a particulate succinate-cytochrome c reductase is +60 +/- 15 mV. In soluble form, Center S-3 becomes extremely labile towards oxygen or ferricyanide plus phenazine methosulfate similar to reconstitutive activity of the dehydrogenase. Thus, even freshly prepared reconstitutively active enzyme preparations show EPR spectra of Center S-3 which correspond approximately to 0.5 eq per flavin; in particulate preparations this component was found in a 1:1 ratio to flavin. All reconstitutively inactive dehydrogenase preparations that Center S-3 is an innate constituent of succinate dehydrogenase and plays an important role in mediating electrons from the flavoprotein subunit to most probably ubiquinone and then to the cytochrome chain.     

Complex biomedical systems: from basic science to translation

The Department of Biomedical Engineering (BME) of the University of Southern California (BME@USC) has a longstanding tradition of advancing biomedicine through the development and application of novel engineering ideas. More than 80 primary and affiliated faculty members conduct cutting-edge research in a wide variety of areas, such as neuroengineering, biosystems and biosignal analysis, medical devices (including biomicroelectromechanical systems (bioMEMS) and bionanotechnology), biomechanics, bioimaging, and imaging informatics. Currently, the department hosts six internationally recognized research centers: the Biomimetic MicroElectronic Systems Engineering Research Center (funded by the National Science Foundation), the Biomedical Simulations Resource [funded by the National Institutes of Health (NIH)], the Medical Ultrasonic Transducer Center (funded by NIH), the Center for Neural Engineering, the Center for Vision Science and Technology (funded by an NIH Bioengineering Research Partnership Grant), and the Center for Genomic and Phenomic Studies in Autism (funded by NIH). BME@USC ranks in the top tier of all U.S. BME departments in terms of research funding per faculty.     

Global Corner Spotlight: Perspectives on Diabetes Care in Cambodia as Seen Through an Ngo-Run Healthcare System

Abbreviations: CMC = Community Medical Center; SGLT2 = sodium-glucose cotransporter 2; SHCH = Sihanouk Hospital Center of Hope     

EPR signals of NADH: Q oxidoreductase. Shape and intensity.

(1) The EPR spectrum of Center 1 of NADH dehydrogenase in isolated Complex I or submitochondrial particles from beef heart consists of two overlapping nearly axial signals of the same intensity. They are defined as Center 1a (gll = 0.021, gl = 1.938) and Center 1b (gll = 2.021, gl = 1.928). (2) The line shape of the EPR spectrum of the Center 3+4 can be interpreted as an overlap of two rhombic signals of the same intensity. We define Center 3 by the g-values: gz=2.103, gy = 1.93-1.94, gx=1.884, and Center 4 by the values gz=2.04, gy=1.92-1.93, gx=1.863. (3) Direct quantitation of the individuals signals as well as computer stimulation suggests that the amount of the Centers 1a and 1b is only 25% of that of the other individuals centers and FMN. As EPR spectra of beef-heart submitochondrial particles at 10-20 K are nearly identical to those of Complex I, the same relative concentrations of the Fe-S centers are also present in the particles. (4) The signals either observed by us in EPR spectra of Complex I and submitochondrial particles at 4.2 K and high microwave powers can now be explained without assuming more than 5 paramagnetic centers in NADH dehydrogenase.     

A new EPR signal associated with photosystem 1 of algal and plant photosynthesis

A new low temperature electron paramagnetic resonance (EPR) signal with a g-value of 1.97 was found in Photosystem-1 particles from a blue-green alga, Anacystis nidulans, illuminated at room temperature. A similar signal was also found in spinach Photosystem-1 particles treated with thiophenol to decrease interference from a signal due to Center A. In the dark, the signal appeared only when the Anacystis particles were at redox potentials lower than -0.5 volts where Centers A and B were also reduced. The signal is most likely due to another iron-sulfur cluster, tentatively designated as Center C. Center C could be photoreduced at low temperatures like Center A when Centers A and B were partially reduced prior to illumination, indicating possible close association of these centers in Photosystem 1 of green plant and algal photosynthesis.     

脑血管内皮细胞Prmt5在脑血管发育过程中的表达及其下游靶分子

目的:研究内皮细胞中蛋白精氨酸甲基转移酶5(PRMT5)在脑血管发育及血脑屏障建成的关键时期的表达变化及其潜在下游靶分子。方法:原位观察PRMT5在小鼠不同发育时期脑血管内皮上的分布;流式分选获得原代脑血管内皮,利用real-time PCR分析Prmt5的表达;体外培养小鼠内皮细胞敲降Prmt5后,利用Western印迹、real-time PCR、ChIP等方法检测其对经典下游分子的影响。结果:PRMT5在胚胎期各时间点的脑血管内皮细胞质均有表达,小鼠出生后主要表达在脑血管内皮细胞核,在胚胎期18.5 d时表达量显著升高;小鼠脑血管内皮细胞体外细胞系中基因敲降Prmt5后,其经典对称甲基化组蛋白产物H4R3me2s及H3R2me2s均明显下降,Bmp4表达显著上调;免疫共沉淀实验提示Bmp4启动子区域组蛋白具有H3R2me2s修饰,Prmt5基因敲降后,该组蛋白修饰显著减少。结论:脑血管发育过程中PRMT5在脑血管内皮细胞中表达的位置和水平均发生变化,脑血管内皮细胞中PRMT5可以调节H4R3和H3R2对称二甲基化水平,Bmp4启动子区域组蛋白具有H3R2me2s修饰,且PRMT5可以抑制Bmp4表达。     

Low temperature electron paramagnetic resonance studies on two iron-sulfur centers in cardiac succinate dehydrogenase

At temperatures below 20°K, EPR signals from a new iron-sulfur center (designated here as Center S-2 or (Fe-S)_S-2) in addition to the classical “g = 1.94 signal” (designated as Center S-1 or (Fe-S)_S-1) were detected in purified, soluble succinate dehydrogenase, particulate succinate ubiquinone reductase (Complex II) and particulate succinate cytochrome $\text{c}$ reductase from bovine heart. The measured half-reduction potential (E_m7.4) of Center S-1 was 0 ± 10 mV, while E_m7.4 of Center S-2 was ?260 ± 15 mV in the membrane bound preparations. Upon solubilization of succinate dehydrogenase, the EPR behavior of Center S-2 became extremely labile similar to the characteristics of the reconstitutive activity of succinate dehydrogenase toward the rest of the respiratory chain.