First Quaternary fossil record of Polyplacophorans from southern South America

A diverse assemblages of well-preserved polyplacophoran shell plates is present in Holocene marine deposits along the Beagle Channel, Tierra del Fuego (54°S). They represent the first fossil Quaternary report of polyplacophorans from southern South America. The taxa include Callochiton puniceus (Couthouy MS, Gould), Plaxiphora aurata (Spalowsky), Plaxiphora sp., Tonicia atrata (Sowerby), Tonicia calbucensis Plate, Tonicia chilensis (Frembly), and Tonicia lebruni de Rochebrune. The presence of these taxa in a transitory area between the Atlantic and the Pacific oceans suggests that, in the recent past, the Beagle Channel acted as a path that facilitated faunal dispersion between the two oceans. These records also show an apparent stability of these faunas over a period of several thousand years (from ca. 7500 years BP to present).     

Changes in the Radiocarbon Reservoir Age in Lake Xingyun,Southwestern China during the Holocene

Chronology is a necessary component of paleoclimatology. Radiocarbon dating plays a central role in determining the ages of geological samples younger than ca. 50 ka BP. However, there are many limitations for its application, including radiocarbon reservoir effects, which may cause incorrect chronology in many lakes. Here we demonstrate temporal changes in the radiocarbon reservoir age of Lake Xingyun, Southwestern China, where radiocarbon ages based on bulk organic matter have been reported in previous studies. Our new radiocarbon ages, determined from terrestrial plant macrofossils suggest that the radiocarbon reservoir age changed from 960 to 2200 years during the last 8500 cal a BP years. These changes to the reservoir effect were associated with inputs from either pre-aged organic carbon or ¹⁴C-depleted hard water in Lake Xingyun caused by hydrological change in the lake system. The radiocarbon reservoir age may in return be a good indicator for the carbon source in lake ecosystems and depositional environment.     

Sulphides and furanones from steam volatile oils of Allium fistulosum and Allium chinense

The constituents of the steam volatile oils from two kinds of Allium fistulosum, A. fistulosum var. caespitosum and A. chinense, have been investigated by GC and spectral techniques (IR, UV, GC/MS, ¹H NMR and ¹³C NMR). The compounds identified from the neutral fraction of each volatile oil included sulphides, thiolanes, alcohols, aldehydes, ketones, furanones and others. Among the sulphur compounds, dipropyl disulphide comprised ca 28% of A. fistulosum oil, ca 23% of A. fistulosum var. caespitosum oil and ca 30% of A. chinense oil. A. fistulosum oil was characterized by a large quantity of tridecan-2-one (ca 52%) and 2,3-dihydro-2-octyl-5-methylfuran-3-one (ca 16%). Also, a large amount of 2,3-dihydro-2-hexyl-5-methylfuran-3-one (ca 20%) was isolated from A. chinense oil.     

Sequence complexity of messenger RNA in cotyledons of developing pea (Pisum sativum) seeds

The hybridization kinetics of poly(A)⁺-RNA preparations from the cotyledons of developing pea (Pisum sativum seeds to complementary DNAs have shown that the number of distinct sequences in poly(A)⁺ -RNA decreases from ca 20 000 at the early stage of cotyledon development to ca 200 at a late stage of cotyledon development. The decrease in sequences is accounted for entirely by the disappearance of ‘rare’ poly(A)⁺ -RNAs (< 10³ copies/cell) as seed development proceeds. There is an increase (1–6) in very abundant poly(A)⁺-RNA sequences (? 5 × 10⁵ copies/cell) from early- to mid-developmental stages, concomitantly with the increase in the synthesis of seed-specific storage protein polypeptides. In agreement with the continuing synthesis of most of these polypeptides to the end of seed development, the number of very abundant poly(A)⁺-RNAs is maintained to the late cotyledon development stage. Abundant poly(A)⁺-RNA sequences (ca 10⁴ sequences/cell) increase from 80 to 180 during development, possibly corresponding to the polypeptides which are not storage proteins but are known to be accumulated in pea seeds. Hybridization of single-copy pea genomic DNA sequences to poly(A)⁺-RNA from developing seeds showed that ca 5 % of the single-copy sequences were present in mRNA from mid-development cotyledons. In addition, hybridization of cDNA prepared against poly(A)⁺-RNA from nuclei of early development cotyledons to the corresponding cytoplasmic polysomal poly(A)⁺-RNA showed that the cytoplasmic poly(A)⁺-RNA contained ca 50 % of the sequences present in the nuclei. These results are discussed and interpreted in the light of existing results from similar systems.     

Serum Wisteria Floribunda Agglutinin-Positive Mac-2 Binding Protein Values Predict the Development of Hepatocellular Carcinoma among Patients with Chronic Hepatitis C after Sustained Virological Response

Measurement of Wisteria floribunda agglutinin-positive human Mac-2 binding protein (WFA⁺-M2BP) in serum was recently shown to be a noninvasive method to assess liver fibrosis. The aim of this study was to evaluate the utility of serum WFA⁺-M2BP values to predict the development of hepatocellular carcinoma (HCC) in patients who achieved a sustained virological response (SVR) by interferon treatment. For this purpose, we retrospectively analyzed 238 patients with SVR who were treated with interferon in our department. Serum WFA⁺-M2BP values were measured at pre-treatment (pre-Tx), post-treatment (24 weeks after completion of interferon; post-Tx), the time of HCC diagnosis, and the last clinical visit. Of 238 patients with SVR, HCC developed in 16 (6.8%) patients. The average follow-up period was 9.1 years. The cumulative incidence of HCC was 3.4% at 5 years and 7.5% at 10 years. The median pre-Tx and post-Tx WFA⁺-M2BP values were 1.69 (range: 0.28 to 12.04 cutoff index (COI)) and 0.80 (range: 0.17 to 5.29 COI), respectively. The WFA⁺-M2BP values decreased significantly after SVR (P < 0.001). The median post-Tx WFA⁺-M2BP value in patients who developed HCC was significantly higher than that in patients who did not (P < 0.01). Multivariate analysis disclosed that age (> 60 years), sex (male), pre-Tx platelet count (< 15.0×10³/μL), and post-Tx WFA⁺-M2BP (> 2.0 COI) were associated with the development of HCC after SVR.

Conclusion

Post-Tx WFA⁺-M2BP (> 2.0 COI) is associated with the risk for development of HCC among patients with SVR. The WFA⁺-M2BP values could be a new predictor for HCC after SVR.     

Palaeoenvironmental research on diatoms in early and middle Holocene deposits in central North Holland (The Netherlands)

In the geological research of the Holocene coastal deposits of The Netherlands, diatoms are used to reconstruct the sedimentary facies, palaeo-tide levels and salinity gradients during the deposition of the sediments. In this paper, the results of diatom research from 4 borings, taken from the early and middle Holocene deposits of central North Holland are presented. The oldest marine influenced sediments in the area are the deposits of the ‘Velsen layer’, a clay layer rich in organic matter and deposited about 8000–7000¹⁴C years before present (BP) at a depth of 20–12 m below present mean sea-level. This clay layer was formed in a shallow, permanently submerged environment with a limited tidal influence (lagoonal or pond-like conditions). The salinity changed from brackish/freshwater to marine/brackish. The younger sandy and clayey sediments, formed about 7000–4500 BP at a depth of 16–3 m below present mean sea-level, are classified as ‘tidal channel’ and ‘interchannel’ deposits. It is argued, on the base of both diatom and non-diatom criteria, that the lower and middle parts of the interchannel deposits in the central area of the palaeo-tidal basin of North Holland were formed in a subtidal environment. The upper part of the interchannel deposits and the deposits at the fringe of the North Holland tidal basin were formed in the intertidal zone or, at the fringe of the basin, even in the supratidal zone. The salinity in the North Holland tidal basin during the sedimentation of the tidal channel and interchannel deposits was marine/brackish to marine. This study indicates that diatoms, besides their palaeoecological applications, have chronostratigraphical significance (on a regional scale). The diatomsCymatosira belgica andActinoptychus splendens appear to be a useful (eco)stratigraphical marker in the Holocene coastal deposits of The Netherlands and Belgium.     

Purification and properties of the arginase from Jerusalem artichoke tubers

Arginase [l-arginine amidinohydrolase] in Jerusalem artichoke tubers occurs in a particulate fraction from which it was released in active form by detergent treatment. The particulate enzyme was purified 450-fold with ca 3% yield. The enzyme has a MW of ca 140 000 and pI of 5.3. The enzyme required Mn²⁺ for activity and was unstable when Mn²⁺ was removed. In tissue extracts the K_m for arginine was ca 1OmM, but when purified the K_m (arginine) was 145 mM. The artichoke arginase was shown to be more substrate specific than other plant and animal arginases which have been described, and to be very sensitive to competitive inhibition by indospicine, ornithine and citrulline.     

Absolute dating of sedimentation on Lake Torrens with spring deposits,South Australia

The travertine structure containing Mountford Spring is in the only surface accumulation of CaCO₃ on Lake Torrens, a playa in South Australia. Here the first ¹⁴C data on Lake Torrens is presented. ¹⁴C ages for travertine samples surrounding Mountford Spring, range from 13 770 ± 130 years BP to 22 700 ± 290 years BP, giving a time frame for lacustrine sediments wedged in between. In the absence of recent tectonic movements, the old travertine (22 700 ± 130 years) on the clifftop, surrounded by younger spring deposits (13770 ± 130 years) at a lower level, prove a deflation event at this playa.     

In situ studies of algal biomass in relation to physicochemical characteristics of the Salt Plains National Wildlife Refuge, Oklahoma, USA

This is the first in a series of experiments designed to characterize the Salt Plains National Wildlife Refuge (SPNWR) ecosystem in northwestern Oklahoma and to catalogue its microbial inhabitants. The SPNWR is the remnant of an ancient ocean, encompassing ~65 km² of variably hypersaline flat land, fed by tributaries of the Arkansas River. Relative algal biomass (i.e., chlorophyll concentrations attributed to Chlorophyll-a-containing oxygenic phototrophs) and physical and chemical parameters were monitored at three permanent stations for a one-year period (July 2000 to July 2001) using a nested block design. Salient features of the flats include annual air temperatures that ranged from -10 to 40°C, and similar to other arid/semi-arid environments, 15–20-degree daily swings were common. Shade is absent from the flats system; intense irradiance and high temperatures (air and sediment surface) resulted in low water availability across the SPNWR, with levels of only ca. 15 % at the sediment surface. Moreover, moderate daily winds were constant (ca. 8–12 km h^-1), sometimes achieving maximum speeds of up to 137 km h^-1. Typical of freshwater systems, orthophosphate (PO₄ ^3-) concentrations were low, ranging from 0.04 to <1 μM; dissolved inorganic nitrogen levels were high, but spatially variable, ranging from ca. 250–600 μM (NO₃ ^- + NO₂ ^-) and 4–166 μM (NH₄ ⁺). Phototroph abundance was likely tied to nutrient availability, with high-nutrient sites exhibiting high Chl-a levels (ca. 1.46 mg m^-2). Despite these harsh conditions, the phototrophic microbial community was unexpectedly diverse. Preliminary attempts to isolate and identify oxygenic phototrophs from SPNWR water and soil samples yielded 47 species from 20 taxa and 3 divisions. Our data indicate that highly variable, extreme environments might support phototrophic microbial communities characterized by higher species diversity than previously assumed.     

Modern and fossil diatom assemblages from Bol’shoy Lyakhovsky Island (New Siberian Archipelago,Arctic Siberia)

This article discusses the results of a taxonomic and ecological investigation of diatoms from polygonal ponds and Quaternary permafrost deposits of Bol’shoy Lyakhovsky Island (New Siberian Archipelago) and the reconstruction of climatic changes on the Island during late Pleistocene/Holocene transition using fossil diatom assemblages from the permafrost deposits. The taxonomic list of diatoms includes 159 diatom species. The main ecological factors that determine the distribution of diatoms in the investigated data set are mean July air temperature, рН, electrical conductivity, water depth, and concentrations of Si⁴⁺ and Al³⁺. An increase in water depth and stable lacustrine conditions in the Lateglacial–Holocene in the ancient thermokarst lake relate to Lateglacial warming before 11860 ± 160 years BP and during the early Holocene between 11210 ± 160 and 7095 ± 60 years BP.     

Sorbitol-1-phosphate and sorbitol-6-phosphate in apricot leaves

Sorbitol-1-phosphate and sorbitol-6-phosphate were isolated from Prunus armeniaca leaves that had been labelled with ¹⁴C by photosynthesis in ¹⁴CO₂. Each hexitol phosphate was present at ca 7 μmol/kg fr. wt in the tissue and formed ca 4% of the hexose monophosphate fraction. ¹⁴C-specific activity measurements suggest that each hexitol monophosphate is formed from a hexose monophosphate, and that one or other could be an intermediate in photosynthesis of sorbitol from CO₂.     

Effects of Long-Term Averaging of Quantitative Blood Pressure Traits on the Detection of Genetic Associations

Blood pressure (BP) is a heritable, quantitative trait with intraindividual variability and susceptibility to measurement error. Genetic studies of BP generally use single-visit measurements and thus cannot remove variability occurring over months or years. We leveraged the idea that averaging BP measured across time would improve phenotypic accuracy and thereby increase statistical power to detect genetic associations. We studied systolic BP (SBP), diastolic BP (DBP), mean arterial pressure (MAP), and pulse pressure (PP) averaged over multiple years in 46,629 individuals of European ancestry. We identified 39 trait-variant associations across 19 independent loci (p < 5 × 10⁻⁸); five associations (in four loci) uniquely identified by our LTA analyses included those of SBP and MAP at 2p23 (rs1275988, near KCNK3), DBP at 2q11.2 (rs7599598, in FER1L5), and PP at 6p21 (rs10948071, near CRIP3) and 7p13 (rs2949837, near IGFBP3). Replication analyses conducted in cohorts with single-visit BP data showed positive replication of associations and a nominal association (p < 0.05). We estimated a 20% gain in statistical power with long-term average (LTA) as compared to single-visit BP association studies. Using LTA analysis, we identified genetic loci influencing BP. LTA might be one way of increasing the power of genetic associations for continuous traits in extant samples for other phenotypes that are measured serially over time.     

Adenine nucleotide translocation in plant mitochondria

The rapid translocation of external ADP-[^14C]by corn mitochondria is inhibited by high concentrations of atractyloside with enhanced inhibition occurring in the presence of Mg²⁺. This translocation is also inhibited by AMP or ATP but CDP, GDP, IDP or UDP have little effect. Backward exchange of internal ADP-[¹⁴C] occurs in the presence of AMP, ADP or ATP but is not promoted by other nucleoside diphosphates. It is suggested that the adenine nucleotide (AdN) carrier is specific for ADP and ATP and that apparent translocation of AMP is a result of adenylate kinase activity. The translocated ADP can be separated into 3 components: (1) atractyloside-insensitive binding; (2) carrier-bound ADP saturated at ca 30 μM external ADP; and (3) exchanged ADP saturated as ca 5 μM external ADP. It is suggested that the adenine nucleotide carrier of plant mitochondria possesses similar properties to the classical carrier of vertebrate mitochondria.     

Invasive mollusc faunas of the River Thames exemplify biostratigraphical characterization of the Anthropocene

Profound changes to the species configuration of ecosystems globally during the 19th to 21st centuries, resulting from the introduction of neobiota, have produced a distinctive palaeontological signature in sedimentary deposits, here exemplified by those of the River Thames. Coring near Teddington Lock (ca. 4.3 m above sea level, ca. 89 km upstream from the mouth of the Thames estuary) yielded dense assemblages of shells of the invasive Asian clam Corbicula fluminea (recently invaded in 2004) and the zebra mussel Dreissena polymorpha (invaded 1824), which together accounted for 96% of individuals sampled. Population densities of C. fluminea of over 6000 individuals per m² were maintained for a depth of 1 m indicating that the Asian clam is an important biostratigraphical marker in the Thames for sedimentary deposits accumulating since 2004. The first modern European occurrence of C. fluminea was in Portugal in 1980. In 1987, the first occurrence of C. fluminea on the northern coast of South America was observed in the Caripe River, Venezuela. The non-native range of D. polymorpha was restricted to continental Europe for over 200 years until it appeared in the Great Lakes, USA, in 1986 having been transported in ballast water. Within three years, it reached populations of over 750,000 individuals per m² and it is presently recorded in 35 states. Therefore, the pan-Atlantic range expansion of D. polymorpha, coupled with the recent invasion history of C. fluminea in Venezuela and Portugal, identifies a biostratigraphical interval in sedimentary deposits forming from the early 1980s that can be correlated between Europe and the Americas.     

Effects of metal ions on benzylglucosinolate degradation in Lepidium sativum seed autolysates

The effects of varying concentrations of Fe²⁺ (5 × 10^?5 ?5 × 10^?1 M) on benzylglucosinolate degradation in Lepidium sativum seed autolysates were investigated. Increased glucosinolate decomposition was observed over the whole range with a maximum effect at ca 6 × 10^?3 M Fe²⁺, at which point glucosinolate degradation was more than three times that obtained in the absence of added Fe²⁺ . Nitrile formation was especially enhanced in the presence of all concentrations of Fe²⁺ studied, and maximum amounts were obtained at ca 6 × 10^?3 M Fe²⁺ when a more than four-fold increase over quantities produced in the absence of Fe²⁺ was observed. Thiocyanate formation was also promoted with a maximum at ca 4 × 10^?3 M Fe²⁺, but isothiocyanate production was considerably reduced in allcases. It is suggested that Fe²⁺ inhibits isothiocyanate formation by interfering with the availability of ascorbic acid which is a proven co-factor for most thioglucosidase isoenzymes, but that an Fe²⁺-ascorbate complex might then be responsible for promoting enzymic production of nitrile. The effects of a limited range of concentrations of Fe³⁺ and Cu⁺ were also studied, and results related to those for Fe²⁺. The relevance of the findings to natural systems and to glucosinolate-containing foods is briefly discussed.     

Rewriting the history of an extinction—was a population of Steller's sea cows (Hydrodamalis gigas) at St Lawrence Island also driven to extinction?

The Kommandorskiye Islands population of Steller''s sea cow (Hydrodamalis gigas) was extirpated ca 1768 CE. Until now, Steller''s sea cow was thought to be restricted in historic times to Bering and Copper Islands, Russia, with other records in the last millennium from the western Aleutian Islands. However, Steller''s sea cow bone has been obtained by the authors from St Lawrence Island, Alaska, which is significantly further north. Bone identity was verified using analysis of mitochondrial DNA. The nitrogen-15 (δ¹⁵N)/carbon-13 (δ¹³C) values for bone samples from St Lawrence Island were significantly (p ≤ 0.05) different from Bering Island samples, indicating a second population. Bone samples were dated to between 1030 and 1150 BP (approx. 800–920 CE). The samples date from close to the beginning of the mediaeval warm period, which could indicate that the population at St Lawrence Island was driven to extinction by climate change. A warming of the climate in the area may have changed the availability of kelp; alternatively or in addition, the animals may have been driven to extinction by the expansion of the Inuit from the Bering Strait region, possibly due to opening waterways, maybe following bowhead whales (Balaena mysticetus), or searching for iron and copper. This study provides evidence for a previously unknown population of sea cows in the North Pacific within the past 1000 years and a second Steller''s sea cow extirpation event in recent history.     

Partial purification of nitrilase from Chinese cabbage

Nitrilase was purified ca 28-fold from Chinese cabbage seedlings. K_m values of 5.2 × 10^?4 and 2.6 × 10^?3 M were obtained for indoleacetonitrile (IAN) and 3-cyanopyridine (3-CP) as substrates. For hydrolysis of 3-CP, the maximal velocity was 44 times higher than for the natural substrate IAN. The pH optimum is at 7.5. IAA concentrations from 10^?6 to 10^?3 M did not inhibit the partially purified enzyme. Nitrilase activity was investigated during development of seedlings grown under continuous light. Roots with hypocotyls exhibited only slightly lower activity than cotyledons based on fresh weight, although their specific activity was ca 5 times higher. Etiolated seedlings showed a very similar distribution of nitrilase activity. The significance of the results for IAA biosynthesis is discussed.     

Physiological Outperformance at the Morphologically-Transformed Edge of the Cyanobacteriosponge Terpios hoshinota (Suberitidae: Hadromerida) when Confronting Opponent Corals

Terpios hoshinota, an encrusting cyanosponge, is known as a strong substrate competitor of reef-building corals that kills encountered coral by overgrowth. Terpios outbreaks cause significant declines in living coral cover in Indo-Pacific coral reefs, with the damage usually lasting for decades. Recent studies show that there are morphological transformations at a sponge’s growth front when confronting corals. Whether these morphological transformations at coral contacts are involved with physiological outperformance (e.g., higher metabolic activity or nutritional status) over other portions of Terpios remains equivocal. In this study, we compared the indicators of photosynthetic capability and nitrogen status of a sponge-cyanobacteria association at proximal, middle, and distal portions of opponent corals. Terpios tissues in contact with corals displayed significant increases in photosynthetic oxygen production (ca. 61%), the δ¹³C value (ca. 4%), free proteinogenic amino acid content (ca. 85%), and Gln/Glu ratio (ca. 115%) compared to middle and distal parts of the sponge. In contrast, the maximum quantum yield (F_v/F_m), which is the indicator usually used to represent the integrity of photosystem II, of cyanobacteria photosynthesis was low (0.256~0.319) and showed an inverse trend of higher values in the distal portion of the sponge that might be due to high and variable levels of cyanobacterial phycocyanin. The inconsistent results between photosynthetic oxygen production and F_v/F_m values indicated that maximum quantum yields might not be a suitable indicator to represent the photosynthetic function of the Terpios-cyanobacteria association. Our data conclusively suggest that Terpios hoshinota competes with opponent corals not only by the morphological transformation of the sponge-cyanobacteria association but also by physiological outperformance in accumulating resources for the battle.     

Light-dependent incorporation of selenite and sulphite into selenocysteine and cysteine by isolated pea chloroplasts

Illuminated intact pea chloroplasts in the presence of O-acetylserine (OAS) catalysed incorporation of SeO₃^2- and SO₃^2- into selenocysteine and cysteine at rates of ca 0.36 and 6 μmol/mg Chl per hr respectively. Sonicated chloroplasts catalysed SeO₃^2- and SO₃^2- incorporation at ca 3.9 and 32% respectively of the rates of intact chloroplasts. Addition of GSH and NADPH increased the rates to ca 91 and 98% of the intact rates, but SeO₃^2- incorporation under these conditions was essentially light-independent. In the absence of OAS, intact chloroplasts catalysed reduction of SO₃^2- to S^2- at rates of ca 5.8 μmol/mg Chl per hr. In the presence of OAS, S^2- did not accumulate. Glutathione (GSH) reductase was purified from peas and was inhibited by ZnCl₂. This enzyme, in the presence of purified clover cysteine synthase, OAS, GSH and NADPH, catalysed incorporation of SeO₃^2- into selenocysteine (but not SO₃^2- into cysteine). The reaction was inhibited by ZnCl₂. Incorporation of SeO₃^2- into selenocysteine by illuminated intact chloroplasts and sonicated chloroplasts (with NADPH and GSH) was also inhibited by ZnCl₂ but not by KCN. Conversely, incorporation of SO₃^2- into cysteine was inhibited by KCN but not by ZnCl₂. It was concluded that SeO₃^2- and SO₃^2- are reduced in chloroplasts by independent light-requiring mechanisms. It is proposed that SeO₃^2- is reduced by light-coupled GSH reductase and that the Se^2- produced is incorporated into selenocysteine by cysteine synthase.