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1.
Relationships among the currently recognized 11 diploid species within the genus Aegilops have been investigated. Sequence similarity analysis, based upon 363 sequenced 5S rDNA clones from 44 accessions plus 15 sequences retrieved from GenBank, depicted two unit classes labeled the long AE1 and short AE1. Several different analytical methods were applied to infer relationships within haplomes, between haplomes and among the species, including maximum parsimony and maximum likelihood analyses of consensus sequences, “total evidence” phylogeny analysis and “matrix representation with parsimony” analysis. None were able to depict suites of markers or unit classes that could discern among the seven haplomes as is observed among established haplomes in other genera within the tribe Triticeae; however, most species could be separated when displayed on gene trees. These results suggest that the haplomes currently recognized are so refined that they may be relegated as sub-haplomes or haplome variants. Amblyopyrum shares the same 5S rDNA unit classes with the diploid Aegilops species suggesting that it belongs within the latter. Comparisons of the Aegilops sequences with those of Triticum showed that the long AE1 unit class of Ae. tauschii shared the clade with the equivalent long D1 unit class, i.e., the putative D haplome donor, but the short AE1 unit class did not. The long AE1 unit class but not the short, of Ae. speltoides and Ae. searsii both share the clade with the previously identified long {S1 and long G1 unit classes meaning that both Aegilops species can be equally considered putative B haplome donors to tetraploid Triticum species. The semiconserved nature of the nontranscribed spacer in Aegilops and in Triticeae in general is discussed in view that it may have originated by processes of incomplete gene conversion or biased gene conversion or birth-and-death evolution.  相似文献   

2.
利用重复序列探针染色体荧光原位杂交(FISH)和基因组原位杂交(GISH)技术,对采自青海高原披碱草属种间天然杂种进行细胞学鉴定,同时结合物种分布及形态学特征,共揭示6种不同天然杂种的类型。第一类为垂穗披碱草(Elymus nutans Griseb.)和鹅观草属(Roegneria C.Koch)物种间的天然杂种,染色体数为35,染色体组成为StStYYH;第二类为垂穗披碱草和达乌力披碱草种(Elymus dahuricus Turcz.ex Griseb.)间杂种,染色体数为42,染色体组成为StStHHYY;第三类为达乌力披碱草和老芒麦(Elymus sibiricus L.)种间杂种,染色体数为35,染色体组成为StStHHY;第四类为垂穗披碱草和糙毛以礼草(Kengilia hirsuta Keng)种间杂种,染色体数为42,染色体组成为StStYYHP;第五类为垂穗披碱草和大颖草(Kengilia grandiglumis Keng)种间杂种,染色体数为42,染色体组成为StStYYHP;第六类为糙毛以礼草和赖草(Leymus secalinus(Georgi) Tzvel.)种间杂种,染色体数为35,染色体组成为StYPNsXm。研究结果为进一步研究披碱草属种间杂交渐渗提供了重要参考资料;同时鉴定出的天然杂种可以作为潜在的种质资源在牧草或生态草育种中加以利用。  相似文献   

3.
B R Baum  L G Bailey 《Génome》2000,43(1):79-85
Fifty-three units of 5S rDNA sequences from five accessions of Kengyilia rigidula, a member of the tribe Triticeae that also includes wheat, barley, rye, and their wild relatives, have been amplified by the polymerase chain reaction (PCR), cloned, and sequenced. The genome of K. rigidula consists of three haplomes, St, P, and Y. An evaluation of the aligned sequences of the diverse 53 different 5S DNA units yielded three 5S-unit classes. One unit class, Long S1, was assignable to the St haplome, one unit class, the Long P1, was assignable to the P haplome, and a third unit class, Long H1, was assignable to the H haplome. The last was expected to be assignable to the Y haplome, based on previous knowledge. Evolutionary scenarios are put forward to explain this finding. Among those possibilities is that the number of copies of units assignable to the Y haplome is very small and difficult to detect. Short units, reported earlier in K. alatavica, were not found in K. rigidula.  相似文献   

4.
5S rDNA clones from 12 South American diploid Hordeum species containing the HH genome and 3 Eurasian diploid Hordeum species containing the II genome, including the cultivated barley Hordeum vulgare, were sequenced and their sequence diversity was analyzed. The 374 sequenced clones were assigned to "unit classes", which were further assigned to haplomes. Each haplome contained 2 unit classes. The naming of the unit classes reflected the haplomes, viz. both the long H1 and short I1 unit classes were identified with II genome diploids, and both the long H2 and long Y2 unit classes were recognized in South American HH genome diploids. Based upon an alignment of all sequences or alignments of representative sequences, we tested several evolutionary models, and then subjected the parameters of the models to a series of maximum likelihood (ML) analyses and various tests, including the molecular clock, and to a Bayesian evolutionary inference analysis using Markov chain Monte Carlo (MCMC). The best fitting model of nucleotide substitution was the HKY+G (Hasegawa, Kishino, Yano 1985 model with the Gamma distribution rates of nucleotide substitutions). Results from both ML and MCMC imply that the long H1 and short I unit classes found in the II genome diploids diverged from each other at the same rate as the long H2 and long Y2 unit classes found in the HH genome diploids. The divergence among the unit classes, estimated to be circa 7 million years, suggests that the genus Hordeum may be a paleopolyploid.  相似文献   

5.
Data is presented on the evolutionary dynamics of non-transcribed spacers (NTSs) of 5S rRNA genes in some diploid and polyploid Triticum and Aegilops species. FISH experiments with probes representing different unit classes revealed presence and (or) absence of these sequences in genomes or separate chromosomes of the species. Among the three diploid species only Aegilops speltoides has all of the different unit classes in ribosomal clusters as detected by the probes. Triticum urartu does not have the long D1 signals and Aegilops tauschii does not have the long A1 signals. Both polyploids possess all types of sequences, but because of genome rearrangements after polyploidization there is significant repatterning of single different rDNA unit classes in chromosomal positions when compared with those in diploid progenitors. Additional refined work is needed to ascertain if the sequences in the polyploids are mixed or are located in mini clusters in close proximity to each other. Mantel tests for association between the presence of the FISH signals of the A, B, and D genomes together and separately with the unit class data of the material, i.e., the probes used in FISH, indicated that all signals were associated with their respective probe material, but that there was no association of the unit classes found and the signals to each haplome. All combinations of the partial Mantel tests, e.g., between the A and B haplomes while controlling the effect of the all probes signals, with correlations ranging from 0.48 to 0.79 were all significant. Principal coordinate analysis showed that the signals of most unit class specific probes were more or less equally distant except for the long (S1 and short G1 signals, which were not different, and that the short A1 signals were closely related to the former two, whereas the signals of the long G1 were even less related.  相似文献   

6.
The molecular diversity of the rDNA sequences (5S rDNA units) in 71 accessions from 26 taxa of Avena was evaluated. The analyses, based on 553 sequenced clones, indicated that there were 6 unit classes, named according to the haplomes (genomes) they putatively represent, namely the long A1, long B1, long M1, short C1, short D1, and short M1 unit classes. The long and short M1 unit classes were found in the tetraploid A. macrostachya, the only perennial species. The long M1 unit class was closely related to the short C1 unit class, while the short M1 unit class was closely related to the long A1 and long B1 unit classes. However, the short D1 unit class was more divergent from the other unit classes. There was only one unit class per haplome in Avena, whereas haplomes in the Triticeae often have two. Most of the sequences captured belonged to the long A1 unit class. Sequences identified as the long B1 unit class were found in the tetraploids A. abyssinica and A. vaviloviana and the diploids A. atlantica and A. longiglumis. The short C1 unit class was found in the diploid species carrying the C genome, i.e., A. clauda, A. eriantha, and A. ventricosa, and also in the diploid A. longiglumis, the tetraploids A. insularis and A. maroccana, and all the hexaploid species. The short D1 unit class was found in all the hexaploid species and two clones of A. clauda. It is noteworthy that in previous studies the B genome was found only in tetraploid species and the D genome only in hexaploid species. Unexpectedly, we found that various diploid Avena species contained the B1 and D1 units. The long B1 unit class was found in 3 accessions of the diploid A. atlantica (CN25849, CN25864, and CN25887) collected in Morocco and in 2 accessions of A. longiglumis (CIav9087 and CIav9089) collected in Algeria and Libya, respectively, whereas only 1 clone of A. clauda (CN21378) had the short D1 unit. Thus there might be a clue as to where to search for diploids carrying the B and D genomes. Avena longiglumis was found to be the most diverse species, possibly harboring the A, B, and C haplomes. The long M1 and short M1 are the unit classes typical of A. macrostachya. These results could explain the roles of A. clauda, A. longiglumis, and A. atlantica in the evolution of the genus Avena. Furthermore, one clone of the tetraploid A. murphyi was found to have sequences belonging to the short D1 unit class, which could indicate that A. murphyi might have been the progenitor of hexaploid oats and not, as postulated earlier, A. insularis. The evolution of Avena did not follow the molecular clock. The path inferred is that the C genome is more ancient than the A and B genomes and closer to the genome of A. macrostachya, the only existing perennial, which is presumed to be the most ancestral species in the genus.  相似文献   

7.
Recent molecular phylogenetic studies on Elymus have added to our understanding of the origination of Elymus species. However, evolutionary dynamics and speciation of most species in Elymus are unclear. Molecular phylogeny has demonstrated that reticulate evolution has occurred extensively in the genus, as an example, the largest subunit of RNA polymerase II (rpb2) and phosphoenolpyruvate carboxylase (pepC) data revealed two versions of the St genome, St1 and St2contributing to speciation of E. caninus. Phylogenetic analyses of E. pendulinus uncovered additional genome-level complexity. Our data indicated that both chloroplast and nuclear gene introgression have occurred in the evolutionary process of E. pendulinus. Non-donor species genomes have been detected in severalElymus species, such as in allohexaploid E. repens (StStStStHH), a Taeniatherum-like (Ta genome in Triticeae) GBSSI sequence, Bromus- (Bromeae) and Panicum-like (Paniceae) ITS sequences have been detected. The chloroplast DNA data indicated that Pseudoroegneria is the maternal genome donor to Elymus species, but whether different Elymus species originated from different St donors remains an open question. The origin of the Y genome in Elymus is puzzling. It is clear that the Ygenome is distinct from the St genome, but unclear on the relationships of Y to other genomes in Triticeae. Introgressive hybridization may be an important factor complicating the evolutionary history of the species in Elymus. The extent of introgression and its role in creating diversity in Elymus species should be the objective of further investigations.  相似文献   

8.
通过分析杉木采伐迹地营造阔叶树种尾巨桉和固氮树种黑木相思人工林后土壤微生物群落组成和酶活性,探讨造林树种转换对于改善杉木林地土壤微生物特性的影响.结果表明: 树种转换对土壤微生物群落组成和酶活性的影响主要局限于0~10 cm土壤层.杉木转换为固氮树种黑木相思后,显著提高了0~10 cm土壤层总脂肪酸含量、真菌、革兰氏阳性细菌、革兰氏阴性细菌和放线菌生物量.主成分分析表明,黑木相思人工林土壤微生物群落组成与杉木和尾巨桉人工林具有显著差异,土壤中革兰氏阳性细菌、阴性细菌和放线菌丰度显著提高.在0~10 cm土壤层,黑木相思人工林土壤纤维素水解酶、乙酰氨基-葡萄糖苷酶和酸性磷酸酶活性均显著高于杉木和尾巨桉人工林.研究表明,杉木转变为固氮树种黑木相思后会显著提高微生物生物量和酶活性,有助于土壤有机质的恢复,加快养分循环过程.  相似文献   

9.
为探讨不同树种对滨海沙地干旱贫瘠环境的适应策略,以滨海沙地主要造林树种木麻黄、湿地松、厚荚相思和尾巨桉为对象,研究了不同树种叶片功能性状及养分重吸收特征.结果表明:阔叶树种(厚荚相思和尾巨桉)的叶面积、比叶面积显著高于针叶树种(木麻黄和湿地松),而针叶树叶干物质含量、叶厚度最高.成熟叶和凋落叶的N、P含量表现为阔叶树高于针叶树,成熟叶高于凋落叶,但凋落叶N∶P较高.针叶树种的N、P养分重吸收效率大于阔叶树种,P重吸收效率明显高于N,木麻黄、湿地松、厚荚相思和尾巨桉的N、P吸收效率分别为64.2%、63.1%、47.0%、16.8%和92.5%、81.6%、80.3%、18.0%.比叶面积与叶片N、P含量呈显著正相关,与叶干物质含量,叶厚度以及N、P养分重吸收效率呈显著负相关;叶干物质含量与叶厚度及N、P养分重吸收效率呈显著正相关.就叶片功能的权衡关系而言,木麻黄和湿地松属于缓慢投资-收益型物种,具有较高的养分重吸收效率,而厚荚相思和尾巨桉属于快速投资-收益型物种,养分的重吸收效率较低.不同滨海沙地造林树种通过叶片功能性状及养分重吸收之间的相互协调实现对滨海沙地特殊生境的适应性.  相似文献   

10.
粗糠树是紫草科厚壳村亚科厚壳树属植物,广布于我国长江以南及台湾,在西藏、青海、甘肃及陕西也有少量分布。学名通常采用E.dicksoniHance (1862),标式标本采自湖北。  相似文献   

11.
以山西省翅果油树自然保护区翅果油树(Elaeagnus mollis)种群为研究对象,采用点格局分析中的O-ring统计方法,利用Programita软件对翅果油树群落中主要物种翅果油树、荆条(Vitex negundo var.heterophylla)和黄刺玫(Rosa xanthina)种群的分布格局及其相互关系进行了分析。结果表明:(1)各种群在相对小的尺度上聚集分布特征明显,随尺度增加各种群主要表现出随机分布特征;(2)各树种间的空间关联性主要表现在小尺度范围,随尺度加大空间关联性逐渐不明显;(3)翅果油树种群径级I、II和III在较小尺度时存在明显的聚集分布,径级IV、V和VI在所有尺度上均呈现随机分布;(4)翅果油树种群径级I和II与径级IV、V和VI存在正关联,同时径级I与VI,径级II与V在一定尺度上表现出空间负关联,相邻径级在空间分布上相关性不显著。  相似文献   

12.
Yeasts similar to Candida kruisii were isolated repeatedly from the digestive tracts of basidioma-feeding beetles, especially nitidulids inhabiting and feeding on a variety of agarics in the southeastern USA and Barro Colorado Island, Panama. Based on the identical sequences of the D1/D2 domains of the LSU rRNA gene (rDNA) and host beetle information, the isolates were grouped into 19 genotypes which varied from C. kruisii by up to 38 nucleotide differences in the D1/D2 region. Phylogenetic analysis of rDNA sequences and phenotypic traits placed the isolates in C. kruisii and in nine undescribed taxa. The new species and type strains are designated as Candida pallodes (NRRL Y-27653T), C. tritomae (NRRL Y-27650T), C. panamensis (NRRL Y-27657T), C. lycoperdinae (NRRL Y-27658T), C. atbi (NRRL Y-27651T), C. barrocoloradensis (NRRL Y-27934T), C. aglyptinia (NRRL Y-27935T), C. stri (NRRL Y-48063T), and C. gatunensis (NRRL Y-48064T). A phylogeny based on analysis of a combined database of sequences of SSU and LSU rDNA and the ITS region showed that the nine new species formed a novel sister clade to C. kruisii that was strongly supported by bootstrap analysis. Candida pallodes, C. tritomae, C. panamensis, and C. lycoperdinae formed one subclade, while C. atbi, C. barrocoloradensis, C. aglyptinia, C. stri, and C. gatunensis formed a second distinct subclade within the larger clade. Candida pallodes and C. atbi showed a strong host specificity to beetle species in the genus Pallodes (Coleoptera: Nitidulidae) collected from a variety of agarics. On the other hand, C. panamensis, C. tritomae, and C. lycoperdinae were associated with several unrelated beetles in Erotylidae, Scarabaeidae, Tenebrionidae, and Curculionidae as well as Lycoperdina ferruginea (Nitidulidae). Candida pallodes, C. tritomae, C. lycoperdinae, and C. atbi have been isolated repeatedly in the USA, while the other five new species have been found only at Barro Colorado Island, Panama.  相似文献   

13.
Roegneria is a polyploid perennial genus in the tribe Triticeae. Some species of Roegneria are morphologically similar to genus Elymus and have been classified in Elymus. To investigate the delimitation and phylogenetic relationships of Roegneria, nuclear (ITS, Acc1, and Pgk1) and chloroplast (trnL–trnF) DNA regions were sequenced for 38 allopolyploid species and 32 diploid species of Triticeae. Phylogenetic analyses of nuclear DNA revealed that all Roegneria species were included in the St and Y genome clades, and that the Y genome was closely related to the V and Xp genomes. The chloroplast DNA dataset showed that Roegneria species were grouped with Pseudoroegneria species. The Pseudoroegneria species from the Middle East (P. libanotica and P. tauri) and Central Asia (P. strigosa) were more closely related to Roegneria species. The results suggested that: (i) the species containing the St and Y genomes should be segregated from Elymus and treated as a distinct genus, Roegneria, based on the genomic constitution; (ii) P. libanotica, P. tauri, and/or P. strigosa potentially served as the maternal donor of the St genome in Roegneria; (iii) The Y genome of Roegneria originated from a diploid Y genome species, and the V and Xp genomes may have contributed to Y genome formation; (iv) among Roegneria species of previously uncertain genomic constitution, R. seriotina was tetraploid and possessed the StY genomes, E. calcicolus was hexaploid with the StYH genomic constitution and should be classified in Campeiostachys, R. glaucifolia possessed the StStY genomes, and R. tschimganica had the genomic constitution St1St2Y.  相似文献   

14.
The intra- and interspecific agonistic behavior of Euastacus armatus and Cherax destructor from northeastern Victoria were examined. While the agonistic patterns of E. armatus appeared similar to those shown by most crayfish, individuals of C. destructor execute an unusual, highly stylized cheliped “punch” behavior during strong interactions, along with the other behaviors seen in many species. Juvenile C. destructor exhibited gregarious behavior, tending to co-occupy burrows and being physically near each other. Tests showed that the white chelipeds which are characteristic of mature E. armatus affect the outcome of aggressive interactions. When individuals had their chelipeds whitened, they won agonistic interactions more often. This result held for both intraspecific pairings and size-matched pairings with individuals of C. destructor. Individuals of C. destructor won the majority of size-matched pairings with non-whitened individuals of E. armatus.  相似文献   

15.
After reconsidering the specific characters of Omphalia giovanellae and applying data from the sequences of the D1–D2 domain of the 28S rRNA gene and the ITS region of material collected in Italy and Spain, the species is ascribed to the genus Clitopilus. Considering the rather peculiar characters, especially the smooth spores, C. giovanellae is ascribed to the new section Omphaloidei sect. nov. The species is illustrated with drawings of fresh basidiomata observed in situ, as well as with SEM micrographs of the spores. Also based on DNA sequence data, O. farinolens, recently described from Spain, is shown to be a synonym of C. giovanellae.  相似文献   

16.
The promoter element involved in the expression of a previously characterized cloned clostridial antigen was isolated and characterized. A restriction fragment containing the promoter element of the Clostridium difficile insert was cloned using the promoter probe vector, pGA46. Subclones of the clostridial DNA insert in pGA46 were then analyzed by nucleotide sequencing and by S1 nuclease experiments. The clostridial promoter element exhibits a high degree of homology with typical Escherichia coli promoter elements. This sequence probably represents a unique class of clostridial promoter elements which, given their ability to function in E. coli and C. difficile, can be used in the construction of a shuttle vector capable of gene expression in E. coli and C. difficile.  相似文献   

17.
利用扫描电镜对少花薹草组(Carex sect. Paniceae)27种及4变种(东亚14种4变种,北美13种)小坚果形态与微形态特征进行比较观察。结果表明:(1)所有材料小坚果的形状为倒卵球形和钝三棱状,组内很一致,长度为1.53~3.59 mm,同种不同居群个体差异不显著(P>0.05)。(2)表皮细胞一般为五至七边形,偶有四边形或八边形,丝柄薹草(C. rouyana)不同个体间有变异;垂周璧式样直或微波状;硅质台平,偶有凹或略凸,具1个中心体,C. filipes var. kuzakaiensisC. filipes var. tremula中偶见2个中心体,无卫星体,这些性状种内稳定。(3)利用表皮细胞形状、硅质台凹凸情况和中心体个数对于区分近似种具有价值,如白马薹草(C. baimaensis)和线柄薹草(C. filipes),且可以区分一些种下等级,如线柄薹草及其变种var. kuzakaiensis、var. oligostachys和var. tremula。(4)sect. Paniceae s.s.和sect. Laxiflorae小坚果形态和微形态上具有较高一致性,具有重要分类学意义。  相似文献   

18.
B R Baum  D A Johnson 《Génome》1999,42(5):854-866
The molecular diversity of the 5S rDNA units in 13 accessions of wall barley, which include Hordeum murinum, H. leporinum, and H. glaucum, is reported. Our analyses, based on 54 sequenced clones, indicate the presence of two sequence classes not previously seen in other barley species; namely, the long Y1 unit class and the short Y1 unit class. In addition, the accumulation of new sequence information has allowed us to refine previous groups. Using these new results, along with previously published work, we present a summary of all the unit classes described to date and potential correspondences between 5S rDNA unit classes and haplomes identified previously. In H. murinum, we found the long H1 and long X2 unit classes, and in one of six accessions referable to H. glaucum we found the unique short Y1 unit class. Our cladistic analyses, using orthologous sequences, provide support for the current model for the relationships among several species within the Triticeae.  相似文献   

19.
Understanding hybridization and introgression between natural plant populations can give important insights into the origins of cultivated species. Recent studies suggest differences in ploidy might not create such strong reproductive barriers as once thought, and thus studies into cultivated origins should examine all co-occurring taxa, including those with contrasting ploidy levels. Here, we characterized hybridization between Chrysanthemum indicum L., Chrysanthemum vestitum (Hemsley) Ling and Chrysanthemum vestitum var. latifolium (Zhou & Chen), the most important wild species involved in the origins of cultivated chrysanthemums. We analyzed the population structure of 317 Chrysanthemum accessions based on 13 microsatellite markers and sequenced chloroplast trnL-trnF for a subset of 103 Chrysanthemum accessions. We identified three distinct genetic clusters, corresponding to the three taxa. We detected 20 hybrids between species of different ploidy levels, of which 19 were between C. indicum (4x) and C. vestitum (6x) and one was between C. indicum and C. vestitum var. latifolium (6x). Fourteen hybrids between C. indicum and C. vestitum were from one of the five study sites. Chrysanthemum vestitum and C. vestitum var. latifolium share only one chloroplast haplotype. The substantially different number of hybrids between hybridizing species was likely due to different levels of reproductive isolation coupled with environmental selection against hybrids. In addition, human activities could play a role in the different patterns of hybridization among populations.  相似文献   

20.
本文报道曲霉属及其相关的有性型属、即散囊菌属和裸胞壳属的分类群共15个,其中新变种1个,我国新记录3个。它们是:日本曲霉小囊变种(新变种),赭曲霉,蜂蜜曲霉,孔曲霉,埋藏曲霉(新记录),佩特曲霉(新记录)、亮白曲霉,阿姆斯特丹散囊菌,谢瓦散囊菌,腊叶散囊菌,赤散囊菌,匍匐散囊菌原变种,构巢裸胞壳,无冠裸胞壳和刺孢裸胞壳(新记录)。  相似文献   

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