Populations of the red tide forming dinoflagellate Noctiluca scintillans (Macartney): A comparison between the Black Sea and the northern Adriatic Sea

Populations of Noctiluca scintillans (hereafter Noctiluca) were compared from two regions: the northeastern-central Black Sea and the northern Adriatic Sea. In both seas samples were collected in near-shore waters 2–3 times per month during 2004–2012. For analysis of feeding activities and seasonal dynamics additional cruise data on the open waters of the Black Sea were used. Comparison between the two populations shows similarity in size structure with two classes 401–500 μm and 501–600 μm being the most numerous. Seasonal changes in cell abundance in both seas demonstrated a regular annual maximum with the peak period of high abundances in May–June with additional sporadic peaks in other seasons. In spring the average number of food vacuoles in the cell (1.78) and the proportion of feeding cells in populations (79%) in the Adriatic Sea were similar to those in the Black Sea (1.58 and 76%). In September–October, these parameters were lower both in the Adriatic Sea (0.69 and 49%) and in the Black Sea (1.46 and 65%) demonstrating that Noctiluca was better provided with food in spring. Among biotic parameters (wet phytoplankton biomass, chlorophyll biomass and zooplankton species) only the concentration of the eggs of Calanus euxinus was significantly positively correlated with abundance of Noctiluca. The possible effect of a high concentration of copepod eggs on the growth of Noctiluca in the peak period is discussed. An obvious negative relationship was observed between Noctiluca cell numbers in the peak period and wind velocity in both seas. The most significant negative correlation was observed between the number of windy hours per month (velocity more than 5–6 m s⁻¹) and cell concentrations in the Black Sea (r = −0.92) and in the northern Adriatic Sea (r = −0.67). On this basis, a new hypothesis has been proposed and discussed: in connection with features of the food behavior of Noctiluca, its outbursts during the peak period are controlled by the wind. An evident positive relationship was observed between the number of Noctiluca in the peak period and its quantity in the preceding months in both seas. Thus, we suggest that abundance data during early spring and weather forecasts (winds) may be used for medium-term prediction of Noctiluca outbursts and red tides.     

The contribution of the deep chlorophyll maximum to primary production in a seasonally stratified shelf sea, the North Sea

Results from extensive cruises in the years 2000 and 2001 throughout distinct ecohydrodynamic regions of the central and southern North Sea are presented and used to generate estimates of gross primary production and new production. An undulating CTD fitted with a fluorometer was towed over a distance of 12,000 kms. Fluorescence data were used to determine the chlorophyll distribution and derive estimates of phytoplankton biomass. These results were combined with estimates of primary production (new and regenerated) from experiments from one cruise in order to estimate gross production for a greater geographical extent. Results from repeat inter-annual transects showed that the strength of the thermocline and the associated deep chlorophyll maximum were variable. However, when the primary production was integrated over the 15–40 m depth, the variability between years was low. While the depth and strength of the deep chlorophyll maximum varied across the region, a deep chlorophyll maximum (DCM) is a consistent and widespread feature of this region at around 30 m depth. In 2001 the calculated average primary production rate in summer for the whole area surveyed was 0.91 g C m^?2 day^?1. This daily production equates to ~130 g C m^?2 for the summer stratified period. In the offshore stratified regions around the Dogger Bank and Eastern Central North Sea primary production of 64 g C m^?2 associated with the deep chlorophyll maximum (15–40 m) accounted for 60 % of total primary production during the summer stratified period (after the spring bloom). Approximately 66 % of new production in these areas occurred in the DCM. This study shows the extent of the DCM in the North Sea and demonstrates its importance in sustaining primary production after the spring bloom.     

Grazing impact on the cyanobacterium Microcystis aeruginosa by the heterotrophic flagellate Collodictyon triciliatum in an experimental pond

We estimated the grazing impact of the heterotrophic flagellate Collodictyon triciliatum on the harmful, bloom-forming cyanobacterium Microcystis aeruginosa in an experimental pond during a Microcystis bloom from summer to winter in 2010. For these experiments, we calculated the grazing rates from the digestion rate of C. triciliatum and its food vacuole contents. During the study period, M. aeruginosa exhibited one bloom event with a maximum density of 1.1 × 10⁵ cells ml^?1. The cell density of C. triciliatum fluctuated from below the detection limit to 291 cells ml^?1. The number of M. aeruginosa cells ingested by C. triciliatum food vacuoles ranged between 0.4 and 10.8 cells flagellate^?1, and the digestion rate of C. triciliatum at 25 °C was 0.73 % cell contents min^?1. The grazing rate of C. triciliatum on the M. aeruginosa prey was 0.2–6.9 cells flagellate^?1 h^?1, and its grazing impact was 0.0–25.3 % standing stock day^?1. The functional response of C. triciliatum to the M. aeruginosa prey followed the Michaelis–Menten model of significance (r ² = 0.873, p < 0.001) in our experimental systems, in which the prey concentration varied from 1.0 × 10⁴ to 2.1 × 10⁶ cells ml^?1. The maximum grazing rate was 6.2 prey cells grazer^?1 h^?1, and the half-saturation constant was 1.2 × 10⁵ cells ml^?1. We present evidence that C. triciliatum grazing explained the remarkable decrease in M. aeruginosa cell density in the pond. The present study is the first demonstration of the high potential of protistan grazing on M. aeruginosa to reduce cyanobacterial blooms.     

The influence of upwelling,coastal currents and water temperature on the distribution of the red tide dinoflagellate, <Emphasis Type="Italic">Noctiluca scintillans</Emphasis>, along the east coast of Australia

Quasi-synoptic surveys along the east coast of Australia between 28 and 34°S show that the heterotrophic dinoflagellate, Noctiluca scintillans, occurs along this entire stretch of the coast. Areas of relatively high abundance of Noctiluca were observed downstream of regions predisposed to current-induced upwellings as a consequence of alongshore topographic variations. High-resolution temporal and spatial sampling of upwelling events showed that Noctiluca was abundant (up to 28 cells l^?1) within mature upwelled waters. A high proportion (>80%) of fed Noctiluca cells (cells with prey in their vacuoles) was observed in the mature upwelled waters indicating that the observed increase in abundance of Noctiluca was associated with increased feeding activity. The absolute abundance of Noctiluca in upwelled waters was, however, found to vary from one upwelling location to another and between seasons. In particular, highest abundances of Noctiluca were recorded south of 31.5°S, where the East Australian Current (EAC) characteristically separates from the coast. The high abundances partly arise from southward advection and retention of the Noctiluca cells, and partly from upwelling inshore of the separated EAC driven by cross-shelf boundary layer fluxes. The temperature of the EAC was also found to influence absolute abundances. Surface water temperatures during our summer cruise were anomalously high due to a strong La Niña phase, and up to 4°C warmer than during our spring cruise. We found that the warmer surface water temperatures were associated with relatively lower average abundances of Noctiluca in the near shore zone.     

Uptake of dissolved organic nitrogen by size-fractionated plankton along a salinity gradient from the North Sea to the Baltic Sea

The Baltic Sea is known for its ecological problems due to eutrophication caused by high nutrient input via nitrogen fixation and rivers, which deliver up to 70% of nitrogen in the form of dissolved organic nitrogen (DON) compounds. We therefore measured organic nitrogen uptake rates using self produced ¹⁵N labeled allochthonous (derived from Brassica napus and Phragmites sp.) and autochthonous (derived from Skeletonema costatum) DON at twelve stations along a salinity gradient (34 to 2) from the North Sea to the Baltic Sea in August/September 2009. Both labeled DON sources were exploited by the size fractions 0.2–1.6 μm (bacteria size fraction) and >1.6 μm (phytoplankton size fraction). Higher DON uptake rates were measured in the Baltic Sea compared to the North Sea, with rates of up to 1213 nmol N l^?1 h^?1. The autochthonous DON was the dominant nitrogen form used by the phytoplankton size fraction, whereas the heterotrophic bacteria size fraction preferred the allochthonous DON. We detected a moderate shift from >1.6 μm plankton dominated DON uptake in the North Sea and central Baltic Sea towards a 0.2–1.6 μm dominated DON uptake in the Bothnian Bay and a weak positive relationship between DON concentrations and uptake. These findings indicate that DON is an important component of plankton nutrition and can fuel primary production. It may therefore also contribute substantially to eutrophication in the Baltic Sea especially when inorganic nitrogen sources are depleted.     

Impact of anthropogenic sources on aerosol iron solubility over the Bay of Bengal and the Arabian Sea

Ambient aerosols collected from the marine atmospheric boundary layer of the Bay of Bengal and the Arabian Sea have been studied to assess the fractional solubility of aerosol iron, defined as Fe_ws (%)?=?Fe_ws/Fe_Tot?×?100; where Fe_Tot is total aerosol iron and Fe_ws is water soluble iron. The mass concentration of Fe_Tot over the two oceanic regions is not significantly different. However, the fractional solubility is 1–2 orders of magnitude higher over the Bay of Bengal (1.4–24%) compared to that over the Arabian Sea (0.02–0.4%). The spatio-temporal variability in Fe_ws (%) is attributed to differences in the nature of the mineral dust over the two oceanic regions. The Arabian Sea receives coarse dust from desert regions; whereas transport of alluvial dust from the Indo-Gangetic Plain is a dominant source to the Bay of Bengal. The poor fractional solubility (<1%) of Fe from mineral dust, hitherto overestimated in the literature, is documented for the Arabian Sea. A significant linear relationship (P-value?<?0.001) between Fe_ws (%), Fe_Tot and nss-SO₄ ^2? over the Bay of Bengal provides evidence for the chemical processing of mineral dust. Furthermore, the role of anthropogenic sources (biomass burning and fossil-fuel combustion) in enhancing the Fe_ws (%) is discernible from the chemical composition of fine mode (PM_2.5) aerosols over the Bay of Bengal. The potential impact of these Fe-dust depositions on phytoplankton carbon fixation and surface ocean biogeochemistry is discussed.     

Qualitative importance of the microbial loop and plankton community structure in a eutrophic lake during a bloom of cyanobacteria

Plankton community structure and major pools and fluxes of carbon were observed before and after culmination of a bloom of cyanobacteria in eutrophic Frederiksborg Slotssø, Denmark. Biomass changes of heterotrophic nanoflagellates, ciliates, microzooplankton (50 to 140 μm), and macrozooplankton (larger than 140 μm) were compared to phytoplankton and bacterial production as well as micro- and macrozooplankton ingestion rates of phytoplankton and bacteria. The carbon budget was used as a means to examine causal relationships in the plankton community. Phytoplankton biomass decreased and algae smaller than 20 μm replacedAphanizomenon after the culmination of cyanobacteria. Bacterial net production peaked shortly after the culmination of the bloom (510 μg C liter^?1 d^?1 and decreased thereafter to a level of approximately 124 μg C liter^?1 d^?1. Phytoplankton extracellular release of organic carbon accounted for only 4–9% of bacterial carbon demand. Cyclopoid copepods and small-sized cladocerans started to grow after the culmination, but food limitation probably controlled the biomass after the collapse of the bloom. Grazing of micro- and macrozooplankton were estimated from in situ experiments using labeled bacteria and algae. Macrozooplankton grazed 22% of bacterial net production during the bloom and 86% after the bloom, while microzooplankton (nauplii, rotifers and ciliates larger than 50 μm) ingested low amounts of bacteria and removed 10–16% of bacterial carbon. Both macro-and microzooplankton grazed algae smaller than 20 μm, although they did not control algal biomass. From calculated clearance rates it was found that heterotrophic nanoflagellates (40–440 ml^?1) grazed 3–4% of the bacterial production, while ciliates smaller than 50 μm removed 19–39% of bacterial production, supporting the idea that ciliates are an important link between bacteria and higher trophic levels. During and after the bloom ofAphanizomenon, major fluxes of carbon between bacteria, ciliates and crustaceans were observed, and heterotrophic nanoflagellates played a minor role in the pelagic food web.     

Variability in the sub-surface light climate at ecohydrodynamically distinct sites in the North Sea

This paper shows that the sub-surface light regime in the offshore North Sea varies spatially and seasonally between different ecohydrodynamic regions, which is likely to have important implications for primary production and carbon and nutrient fluxes in different areas of the North Sea. Measurements of downward irradiance were collected using different instruments (i.e. water column-profiling instruments, semi-autonomous moorings, and remote sensing) at three ecohydrodynamically distinct sites in the North Sea: in the southern Bight (SB), at the Oyster Grounds (OG) and north of the Dogger Bank (ND). The ND site was the deepest, and had the lowest and least variable light attenuation coefficients (mean K_d(PAR) = 0.11 m^?1). The onset of the phytoplankton spring bloom was earlier than at the other two sites. In summer, ND had low K_d(PAR) ~ 0.07 m^?1 and light penetration was shifted towards blue-green wavelengths (490–560 nm), with water itself being one of the strongest contributors to overall attenuation. In contrast, the SB site was characterised by the highest and most variable values of K_d(PAR) (mean = 0.54 m^?1), comparable to near-coastal waters, and the spring bloom started almost a month later than at the ND site. The vertical variability of the attenuation coefficient and the strong PAR attenuation in the blue region of the spectrum were the result of higher concentrations of phytoplankton, CDOM and SPM, due to riverine inputs, shallow depth and strong tidal mixing. The OG site showed intermediate conditions between the ND and SB sites with a mean K_d(PAR) = 0.23 m^?1, and deepest penetration of irradiance in the green region of the spectrum at 560 nm. The implications of these results for phytoplankton growth and ecosystem modelling are discussed.     

Comparative analysis of prokaryotic diversity in solar salterns in eastern Anatolia (Turkey)

The prokaryotic communities of four salterns (Bingöl, Fadlum, Kemah, and Tuzlagözü) in Turkey were examined and compared using the cultivation and cultivation-independent methods [fluorescence in situ hybridization (FISH) and 454 pyrosequencing]. FISH analysis with universal probes revealed that feeding waters carried 1.6 × 10²–1.7 × 10³ cells mL^?1, while crystallization ponds carried 3.8 × 10⁶–2.0 × 10⁷ cells mL^?1 that were mostly haloarchaea, including square cells (except for Kemah). High-throughput 16S rRNA-based gene sequencing showed that the most frequent archaeal OTUs in Bingöl, Fadlum, Tuzlagözü, and Kemah samples were affiliated with Haloquadratum (76.8 %), Haloarcula (27.8 %), Halorubrum (49.6 %), and Halonotius (59.8 %), respectively. Bacteroidetes was the dominant bacterial phylum in Bingöl and Fadlum, representing 71.5 and 79.5 % of the bacterial OTUs (respectively), while the most abundant bacterial phylum found in the Kemah saltern was Proteobacteria (79.6 %). The majority of the bacterial OTUs recovered from Tuzlagözü belonged to the Cyanobacteria (35.7 %), Bacteroidetes (35.0 %), and Proteobacteria (25.5 %) phyla. Cultivation studies revealed that the archaeal isolates were closely related to the genera Halobacterium, Haloarcula, and Halorubrum. Bacterial isolates were confined to two phyla, Proteobacteria (Alphaproteobacteria and Gammaproteobacteria classes) and Bacteroidetes. Comparative analysis showed that members of the Euryarchaeota, Bacteroidetes, Proteobacteria, and Cyanobacteria phyla were major inhabitants of the solar salterns.     

Embryology of zygote and development of germling in Sargassum vachellianum Greville (Fucales,Phaeophyta)

Sargassum vachellianum Greville is one of the most important members in the subtidal seaweed flora along the coasts of the Eastern China Sea. In order to understand the embryology of zygotes and development of germlings in S. vachellianum, we performed artificial ripening, systematically observed the morphological changes and development of the fertilized eggs and germlings, and explored the effects of culture conditions on the growth of the germlings. The receptacles matured, and eggs and sperm were released after 1–5 days of culture at 21–24 °C under 60–90 μmol photons m^?2 s^?1 (14L:10D). Once fertilized, zygotes immediately detached from the female receptacles and began to germinate. Eight nuclei in the released fresh zygote soon begun to fuse, forming a large central nucleus, and underwent two horizontal divisions to produce a small “original rhizoid cell,” which eventually formed rhizoids after several divisions, and three other cells which eventually formed landmine-like germlings after several continuous divisions. The germlings then formed rhizoids and attached onto the bottom of the flask within 12 h of culture. The growth and development of the germlings younger than 20 days were significantly influenced by the culture temperature and light, with the optimal conditions being 21 °C and 40 μmol photons m^?2 s^?1. However, for germlings older than 30 days, the optimal conditions were 24 °C and 60 μmol photons m^?2 s^?1.     

Comparison of RNA- and DNA-based bacterial communities in a lab-scale methane-degrading biocover

Methanotrophs must become established and active in a landfill biocover for successful methane oxidation. A lab-scale biocover with a soil mixture was operated for removal of methane and nonmethane volatile organic compounds, such as dimethyl sulfide (DMS), benzene (B), and toluene (T). The methane elimination capacity was 211?±?40 g?m^?2 d^?1 at inlet loads of 330–516 g?m^?2 d^?1. DMS, B, and T were completely removed at the bottom layer (40–50 cm) with inlet loads of 221.6?±?92.2, 99.6?±?19.5, and 23.4?±?4.9 mg m^?2 d^?1, respectively. The bacterial community was examined based on DNA and RNA using ribosomal tag pyrosequencing. Interestingly, methanotrophs comprised 80 % of the active community (RNA) while 29 % of the counterpart (DNA). Types I and II methanotrophs equally contributed to methane oxidation, and Methylobacter, Methylocaldum, and Methylocystis were dominant in both communities. The DNA vs. RNA comparison suggests that DNA-based analysis alone can lead to a significant underestimation of active members.     

Diversity of diazotrophs in arid and semi-arid regions of Haryana and evaluation of their plant growth promoting potential on Bt-cotton and pearl millet

This study revealed cultivable diazotrophs in arid and semi-arid regions of Haryana, India, harboring multiple plant growth promoting (PGP) traits, i.e. nitrogenase activity (18.84–337.26 nmol ethylene mg^?1 protein h^?1), indole-3-acetic acid production (42.4–1162.7 μg mL^?1), ammonia excretion (0.013–2.561 μg mL^?1), phosphate solubilization (55.8 %), and siderophore production (20.58 %). High diversity among diazotrophic bacterial isolates was deciphered by using amplified ribosomal DNA restriction analysis with MspI and HaeIII. All the isolates positively influenced the growth and yield of Bt-cotton and pearl millet plants under pot house conditions. On the basis of their plant growth promoting potential, 10 efficient bacterial strains were selected. Sequence analysis of these strains revealed two phyla of bacteria in the 16S rRNA library, which consisted of α and γ subclasses of the Proteobacteria and Firmicutes. The dominant group was Firmicutes (80 % of the total isolates), and the most dominant genus was Bacillus. Overall, our study reported bacterial strains with biofertilizer potential and could be considered as an excellent addition to existing beneficial microbes’ consortium for growth promotion of Bt-cotton and pearl millet plants in arid and semi-arid regions.     

Productivity and Temperature as Drivers of Seasonal and Spatial Variations of Dissolved Methane in the Southern Bight of the North Sea

Dissolved CH₄ concentrations in the Belgian coastal zone (North Sea) ranged between 670 nmol l^?1 nearshore and 4 nmol l^?1 offshore. Spatial variations of CH₄ were related to sediment organic matter (OM) content and gassy sediments. In nearshore stations with fine sand or muddy sediments, the CH₄ seasonal cycle followed water temperature, suggesting methanogenesis control by temperature in these OM-rich sediments. In offshore stations with permeable sediments, the CH₄ seasonal cycle showed a yearly peak following the chlorophyll-a spring peak, suggesting that in these OM-poor sediments, methanogenesis depended on freshly produced OM delivery. This does not exclude the possibility that some CH₄ might originate from dimethylsulfide (DMS) or dimethylsulfoniopropionate (DMSP) or methylphosphonate transformations in the most offshore stations. Yet, the average seasonal CH₄ cycle was unrelated to those of DMS(P), very abundant during the Phaeocystis bloom. The annual average CH₄ emission was 126 mmol m^?2 y^?1 in the most nearshore stations (~4 km from the coast) and 28 mmol m^?2 y^?1 in the most offshore stations (~23 km from the coast), 1260–280 times higher than the open ocean average value (0.1 mmol m^?2 y^?1). The strong control of CH₄ by sediment OM content and by temperature suggests that marine coastal CH₄ emissions, in particular in shallow areas, should respond to future eutrophication and warming of climate. This is supported by the comparison of CH₄ concentrations at five stations obtained in March 1990 and 2016, showing a decreasing trend consistent with alleviation of eutrophication in the area.     

Anammox bacterial populations in deep marine hypersaline gradient systems

To extend the knowledge of anaerobic ammonium oxidation (anammox) habitats, bacterial communities were examined in two hypersaline sulphidic basins in Eastern Mediterranean Sea. The 2 m thick seawater–brine haloclines of the deep anoxic hypersaline basins Bannock and L’Atalante were sampled in intervals of 10 cm with increasing salinity. ¹⁵N isotope pairing incubation experiments showed the production of ²⁹N₂ and ³⁰N₂ gases in the chemoclines, ranging from 6.0 to 9.2 % salinity of the L’Atalante basin. Potential anammox rates ranged from 2.52 to 49.65 nmol N₂ L^?1 day^?1 while denitrification was a major N₂ production pathway, accounting for more than 85.5 % of total N₂ production. Anammox-related 16S rRNA genes were detected along the L’Atalante and Bannock haloclines up to 24 % salinity, and the amplification of the hydrazine synthase genes (hzsA) further confirmed the presence of anammox bacteria in Bannock. Fluorescence in situ hybridisation and sequence analysis of 16S rRNA genes identified representatives of the marine anammox genus ‘Candidatus Scalindua’ and putatively new operational taxonomic units closely affiliated to sequences retrieved in marine environments that have documented anammox activity. ‘Scalindua brodae’ like sequences constituted up to 84.4 % of the sequences retrieved from Bannock. The anammox community in L’Atalante was different than in Bannock and was stratified according to salinity increase. This study putatively extends anammox bacterial habitats to extremely saline sulphidic ecosystems.     

Functional rigidity of a methane biofilter during the temporal microbial succession

Temporal microbial succession was investigated in relation to the performance of a methane biofilter. A laboratory-scale biofilter packed with perlite was operated for 108 days, without a deliberate biomass control. The system performance was stable over the period with a mean elimination capacity of 1,563 g m^?3 day^?1, despite a temporal deterioration (45–56 days). Ribosomal-tag pyrosequencing showed that bacterial communities at days 14–28 were distinct from those of days 68–108. The accumulation of nonviable substances strongly coincided with the community change (R ²?>?0.97). Rhodobacter, Hydrogenophaga, and Methylomonas were dominated in the earlier period, while Methylocaldum and Methylococcus were abundant in the later period. The methanotrophic proportion gradually increased to 41 %, and type I methanotrophs became predominant over time. However, community structure and methanotrophic population density stably retained over time, allowing the system to keep the similar performance. Therefore, the perlite biofilter system was functionally rigid against the temporal microbial succession.     

Effect of nitrogen and phosphorus fertilization on the composition of rhizobacterial communities of two Chilean Andisol pastures

The effect of nitrogen (N) and phosphorus (P) fertilization on composition of rhizobacterial communities of volcanic soils (Andisols) from southern Chile at molecular level is poorly understood. This paper investigates the composition of rhizobacterial communities of two Andisols under pasture after 1- and 6-year applications of N (urea) and P (triple superphosphate). Soil samples were collected from two previously established sites and the composition of rhizobacterial communities was determined by denaturing gradient gel electrophoresis (PCR–DGGE). The difference in the composition and diversity between rhizobacterial communities was assessed by nonmetric multidimensional scaling (MDS) analysis and the Shannon–Wiener index. In Site 1 (fertilized for 1 year), PCR–DGGE targeting 16S rRNA genes and MDS analysis showed that moderate N application (270 kg N ha^?1 year^?1) without P significantly changed the composition of rhizobacterial communities. However, no significant community changes were observed with P (240 kg P ha^?1 year^?1) and N–P application (270 kg N ha^?1 year^?1 plus 240 kg P ha^?1 year^?1). In Site 2 (fertilized for 6 years with P; 400 kg P ha^?1 year^?1), PCR–DGGE targeting rpoB, nifH, amoA and alkaline phosphatase genes and MDS analysis showed changes in rhizobacterial communities only at the highest rate of N application (600 kg N ha^?1 year^?1). Quantitative PCR targeting 16S rRNA genes also showed higher abundance of bacteria at higher N application. In samples from both sites, the Shannon–Wiener index did not show significant difference in the diversity of rhizobacterial communities. The changes observed in rhizobacterial communities coincide in N fertilized pastures with lower soil pH and higher pasture yields. This study indicates that N–P application affects the soil bacterial populations at molecular level and needs to be considered when developing fertilizer practices for Chilean pastoral Andisols.     

Reef-scale failure of coral settlement following typhoon disturbance and macroalgal bloom in Palau,Western Pacific

Factors affecting coral recruitment are critical in influencing the scope and rate of reef recovery after disturbance. In December 2012, super-typhoon Bopha caused immense damage to the eastern reefs of Palau, resulting in near complete loss of coral cover. Within weeks following the typhoon, an ephemeral monospecific bloom of the foliose red macroalga Liagora (up to 40 % cover in February 2013) was recorded at impacted reefs with moderate wave exposure. Conversely, impacted and un-impacted reefs in areas of low wave exposure remained Liagora free. To quantify the effect of this ephemeral macroalgal bloom on coral recruitment, we installed settlement tiles during the major spawning period (March–April 2013) at forereefs with and without Liagora. Reefs (n = 3) with Liagora (13–24 % cover in April) experienced an almost complete failure of settlement, with only two individual corals recorded on settlement tiles (n = 90). This settlement failure was unexpected, as tiles were situated adjacent to, and not within Liagora canopies. In contrast, settlement was significantly higher on reefs that lacked macroalgae (n = 3), ranging from an average of 0.5–2.5 and 2.7–18.9 individuals 25 cm^?2 per top- and under-sided tile, respectively. Reefs with and without Liagora were in close proximity (≤8 km), and hydrodynamic models predicted that larval supply did not limit coral settlement among sites. While some differences in the community composition on the tiles were observed among sites, settlement substrate availability also did not limit coral settlement. Generalised linear mixed effects models indicated that while no settlement substrate explained more than 10 % of the variability in coral settlement, coral cover positively accounted for 26 %, and the cover of Liagora on reefs negatively accounted for more than 50 % of the observed variation. Combined, our results indicate that the typhoon induced ephemeral macroalgal bloom resulted in a reef-scale failure of coral settlement.     

Changes in bacterial CO2 fixation with depth in agricultural soils

Soils were incubated continuously in an atmosphere of ¹⁴CO₂ and the distribution of labeled C into soil organic carbon (¹⁴C-SOC) was determined at 0–1, 1–5, and 5–17 cm down the profile. Significant amounts of ¹⁴C-SOC were measured in paddy soils with a mean of 1,180.6?±?105.2 mg kg^–1 at 0–1 cm and 135.3?±?47.1 mg kg^?1 at 1–5 cm. This accounted for 5.9?±?0.7 % and 0.7?±?0.2 %, respectively, of the total soil organic carbon at these depths. In the upland soils, the mean ¹⁴C-SOC concentrations were 43 times (0–1 cm) and 11 times (1–5 cm) lower, respectively, than those in the paddy soils. The amounts of ¹⁴C incorporated into the microbial biomass (MBC) were also much lower in upland soils (5.0?±?3.6 % and 2.9?±?1.9 % at 0–1 and 1–5 cm, respectively) than in paddy soils (34.1?±?12.4 % and 10.2?±?2.1 % at 0–1 and 1–5 cm, respectively). Similarly, the amount of ¹⁴C incorporated into the dissolved organic carbon (DOC) was considerably higher in paddy soils (26.1?±?6.9 % and 6.9?±?1.3 % at 0–1 and 1–5 cm, respectively) than in upland soils (6.0?±?2.7 % and 4.3?±?2.2 %, respectively). The observation that the majority of the fixed ¹⁴C-SOC, RubisCO activity and cbbL gene abundance were concentrated at 0–1 cm depth and the fact that light is restricted to the top few millimeters of the soil profiles highlighted the importance of phototrophs in CO₂ fixation in surface soils. Phylogenetic analysis of the cbbL genes showed that the potential for CO₂ fixation was evident throughout the profile and distributed between both photoautotrophic and chemoautotrophic bacteria such as Rhodopseudomonas palustris, Bradyrhizobium japonicum, Rubrivivax gelatinosus and Ralstonia eutropha.     

Tobermolite effects on methane removal activity and microbial community of a lab-scale soil biocover

Three identical lab-scale biocovers were packed with an engineered soil (BC 1), tobermolite only (BC 2), and a mixture of the soil and tobermolite (BC 3), and were operated at an inlet load of 338–400 g-CH₄ m^?2 d^?1 and a space velocity of 0.12 h^?1. The methane removal capacity was 293 ± 47 g-CH₄ m^?2 d^?1 in steady state in the BC 3, which was significantly higher than those in the BC 1 and BC 2 (106 ± 24 and 114 ± 48 g-CH₄ m^?2 d^?1, respectively). Quantitative PCR indicated that bacterial and methanotrophic densities (6.62–6.78 × 10⁷ 16S rDNA gene copy number g-dry sample^?1 and 1.37–2.23 × 10⁷ pmoA gene copy number g-dry sample^?1 in the BC 1 and BC 3, respectively) were significantly higher than those in the BC 2. Ribosomal tag pyrosequencing showed that methanotrophs comprised approximately 60 % of the bacterial community in the BC 2 and BC 3, while they only comprised 43 % in the BC 1. The engineered soil favored the growth of total bacteria including methanotrophs, while the presence of tobermolite enhanced the relative abundance of methanotrophs, resulting in an improved habitat for methanotrophs as well as greater methane mitigation performance in the mixture. Moreover, a batch experiment indicated that the soil and tobermolite mixture could display a stable methane oxidation level over wide temperature (20–40 °C, at least 38 μmol g-dry sample^?1 h^?1) and pH (5–8, at least 61 μmol g-dry sample^?1 h^?1) ranges. In conclusion, the soil and tobermolite mixture is promising for methane mitigation.