Homologies in processing and sequence between the 23S ribosomal ribonucleic acids of Paracoccus denitrificans and Rhodopseudomonas sphaeroides

We have shown that mature 50S ribosomal subunits of Paracoccus denitrificans lack intact 23S rRNA, containing instead rRNAs of 0.56 (16S) and 0.37 (14S)x10⁶ molecular weight. Kinetic labelling studies showed these to be derived from a 1.02x10⁶ dalton precursor, which may itself derive from a larger and very transient 23S species. A similar pattern of rRNA processing has been previously described for Rhodopseudomonas sphaeroides, and we have compared, by Tl oligonucleotide catalog analysis, the smaller (14S) fragments of P. denitrificans and R. sphaeroides 23S rRNAs. These were shown to exhibit strong sequence homology, and comparisons of 14S-derived oligonucleotides to oligonucleotides from an in vitro-generated 13S fragment of Escherichia coli 23S rRNA suggest that P. denitrificans and R. sphaeroides 14S rRNAs arise from the 5-terminal portions of their respective 23S precursors. Results are considered to be consistent with the claim that P. denitrificans arose, by loss of photophosphorylation, from a member of the Rhodospirillaceae.Abbreviations E buffer 60 ml 2 M Tris base, 20 ml 3 M sodium acetate, 15 ml 0.2M disodium EDTA, 6 ml glacial acetic acid, 900 ml distilled water - HEPES N-2-hydroxymethyl piperazine-N-2-ethanesulfonic acid - TMK 5 mM Tris-Cl, 0.1 mM MgSO₄, 60 mM KCl. pH 7.3 - TM3 10 mM Tris-Cl, 1 mM MgCl₂, pH 7.3 - Tris tris (hydroxymethyl) aminomethane - SDS sodium dodecyl sulphate