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Genome sequence of the phage-gene rich marine Phaeobacter arcticus type strain DSM 23566T
Authors:Heike M. Freese  Hajnalka Dalingault  J?rn Petersen  Silke Pradella  Karen Davenport  Hazuki Teshima  Amy Chen  Amrita Pati  Natalia Ivanova  Lynne A. Goodwin  Patrick Chain  John C. Detter  Manfred Rohde  Sabine Gronow  Nikos C. Kyrpides  Tanja Woyke  Thorsten Brinkhoff  Markus G?ker  J?rg Overmann  Hans-Peter Klenk
Abstract:Phaeobacter arcticus Zhang et al. 2008 belongs to the marine Roseobacter clade whose members are phylogenetically and physiologically diverse. In contrast to the type species of this genus, Phaeobacter gallaeciensis, which is well characterized, relatively little is known about the characteristics of P. arcticus. Here, we describe the features of this organism including the annotated high-quality draft genome sequence and highlight some particular traits. The 5,049,232 bp long genome with its 4,828 protein-coding and 81 RNA genes consists of one chromosome and five extrachromosomal elements. Prophage sequences identified via PHAST constitute nearly 5% of the bacterial chromosome and included a potential Mu-like phage as well as a gene-transfer agent (GTA). In addition, the genome of strain DSM 23566T encodes all of the genes necessary for assimilatory nitrate reduction. Phylogenetic analysis and intergenomic distances indicate that the classification of the species might need to be reconsidered.
Keywords:aerobic   psychrophilic   motile   high-quality draft   prophage-like structures   extrachromosomal elements   assimilatory nitrate reduction   Alphaproteobacteria   Roseobacter clade
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