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Membrane association and activity of 15/16-membered peptide antibiotics: Zervamicin IIB, ampullosporin A and antiamoebin I
Authors:TN Kropacheva  H-H Nguyen  ZA Yakimenko  TV Ovchinnikova
Institution:a Chemistry Department, Udmurt State University, Izhevsk, Russia
b Institute of Chemical Kinetics and Combustion, Academy of Sciences, Novosibirsk, Russia
c Institute of Biochemistry and Biophysics, Friedrich-Schiller-University, Jena, Germany
d Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russia
e Leiden Institute of Chemistry, Gorlaeus Laboratories, University of Leiden, P.O. Box 9502, 2300RA, Leiden, The Netherlands
Abstract:Permeabilization of the phospholipid membrane, induced by the antibiotic peptides zervamicin IIB (ZER), ampullosporin A (AMP) and antiamoebin I (ANT) was investigated in a vesicular model system. Membrane-perturbing properties of these 15/16 residue peptides were examined by measuring the K+ transport across phosphatidyl choline (PC) membrane and by dissipation of the transmembrane potential. The membrane activities are found to decrease in the order ZER > AMP >> ANT, which correlates with the sequence of their binding affinities. To follow the insertion of the N-terminal Trp residue of ZER and AMP, the environmental sensitivity of its fluorescence was explored as well as the fluorescence quenching by water-soluble (iodide) and membrane-bound (5- and 16-doxyl stearic acids) quenchers. In contrast to AMP, the binding affinity of ZER as well as the depth of its Trp penetration is strongly influenced by the thickness of the membrane (diC16:1PC, diC18:1PC, C16:0/C18:1PC, diC20:1PC). In thin membranes, ZER shows a higher tendency to transmembrane alignment. In thick membranes, the in-plane surface association of these peptaibols results in a deeper insertion of the Trp residue of AMP which is in agreement with model calculations on the localization of both peptide molecules at the hydrophilic-hydrophobic interface. The observed differences between the membrane affinities/activities of the studied peptaibols are discussed in relation to their hydrophobic and amphipathic properties.
Keywords:ZER  zervamicin IIB  AMP  ampullosporin A  ANT  antiamoebin I  ALA  alamethicin  5(16)-doxyl SA  5(16)-doxyl stearic acid  PC  phospatidyl choline  DPoPC (diC16:1 PC  1  2-dipalmitoleoyl-sn-glycero-3-phosphocholine  POPC (C16:0/C18:1 PC)  1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine  DOPC (diC18:1 PC)  1  2-dioleoyl-sn-glycero-3-phosphocholine  DEiPC (diC20:1 PC)  1  2-dieicosenoyl-sn-glycero-3-phosphocholine  LUV  large unilamellar vesicle  CD  circular dichroism  SA  surface associated  TM  transmembrane
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