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Combinatorial screening algorithm to engineer multiepitope subunit vaccine targeting human T-lymphotropic virus-1 infection
Authors:Rajan K Pandey  Rupal Ojha  Nina Chatterjee  Nitesh Upadhyay  Amit Mishra  Vijay K Prajapati
Institution:1. Department of Biochemistry, School of Life Sciences, Central University of Rajasthan, Ajmer, Rajasthan, India

Rajan K. Pandey and Rupal Ojha contributed equally to this study.;2. Department of Biochemistry, School of Life Sciences, Central University of Rajasthan, Ajmer, Rajasthan, India;3. Cellular and Molecular Neurobiology Unit, Indian Institute of Technology Jodhpur, Jodhpur, Rajasthan, India

Abstract:Human T-lymphotropic virus (HTLV), the first human retrovirus has been discovered which is known to cause the age-old assassinating disease HTLV-1 associated myelopathy. Cancer caused by this virus is adult T cell leukemia/lymphoma which targets 10–20 million throughout the world. The effect of this virus extends to the fact that it causes chronic disease to the spinal cord resulting in loss of sensation and further causes blood cancer. So, to overcome the complications, we designed a subunit vaccine by the assimilation of B-cell, cytotoxic T-lymphocyte , and helper T-lymphocyte epitopes. The epitopes were joined together along with adjuvant and linkers and a vaccine was fabricated which was further subjected to 3D modeling. The physiochemical properties, allergenicity, and antigenicity were evaluated. Molecular docking and dynamics were performed with the obtained 3D model against toll like receptor (TLR-3) immune receptor. Lastly, in silico cloning was performed to ensure the expression of the designed vaccine in pET28a(+) expression vector. The future prospects of the study entailed the in vitro and in vivo experimental analysis for evaluating the immune response of the designed vaccine construct.
Keywords:adjuvant  epitopes  human T-lymphotropic virus (HTLV-1)  pET28a  subunit vaccine  TLR-3 agonist
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