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Emerging frontiers in virtual drug discovery: From quantum mechanical methods to deep learning approaches
Affiliation:1. Department of Biotechnology, Bhupat and Jyoti Mehta School of Biosciences, Indian Institute of Technology Madras, Chennai, Tamil Nadu, India;2. Department of Pharmaceutical Engineering, Vinayaka Mission''s Kirupananda Variyar Engineering College, Vinayaka Mission''s Research Foundation (Deemed to be University), Salem, Tamil Nadu, India;3. Department of Internal Medicine, Division of Medical Oncology and Comprehensive Cancer Center, The Ohio State University, Columbus, OH, United States;4. Advanced Computational Drug Discovery Unit (ACDD), Tokyo Tech World Research Hub Initiative (WRHI), Institute of Innovative Research, Tokyo Institute of Technology, Midori-ku, Yokohama, Japan
Abstract:Virtual screening-based approaches to discover initial hit and lead compounds have the potential to reduce both the cost and time of early drug discovery stages, as well as to find inhibitors for even challenging target sites such as protein–protein interfaces. Here in this review, we provide an overview of the progress that has been made in virtual screening methodology and technology on multiple fronts in recent years. The advent of ultra-large virtual screens, in which hundreds of millions to billions of compounds are screened, has proven to be a powerful approach to discover highly potent hit compounds. However, these developments are just the tip of the iceberg, with new technologies and methods emerging to propel the field forward. Examples include novel machine-learning approaches, which can reduce the computational costs of virtual screening dramatically, while progress in quantum-mechanical approaches can increase the accuracy of predictions of various small molecule properties.
Keywords:Structure-based virtual screens  Quantum chemistry  Ultra-large virtual screens  Machine learning  Molecular docking  Ligand preparation  ADMET  Drug discovery  2000 MSC: 65Y05, 68W10
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