Characterization of paralogous protein families in rice |
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Authors: | Haining Lin Shu Ouyang Amy Egan Kan Nobuta Brian J Haas Wei Zhu Xun Gu Joana C Silva Blake C Meyers C Robin Buell |
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Affiliation: | (1) The Institute for Genomic Research, 9712 Medical Center Dr., Rockville, MD 20850, USA and J.Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA;(2) Department of Plant and Soil Sciences & Delaware Biotechnology Institute, University of Delaware, Newark, DE 19711, USA;(3) Department of Genetics, Development, and Cell Biology, Iowa State University, Ames, IA 50011, USA;(4) Center for Bioinformatics and Biological Statistics, Iowa State University, Ames, IA 50011, USA;(5) The Broad Institute, 7 Cambridge Center, Cambridge, MA 02142, USA;(6) Institute for Genome Sciences & Department of Microbiology & Immunology, University of Maryland, Baltimore, School of Medicine, HSF-II, Rm S-445, 20 Penn St, Baltimore, MD 21201, USA;(7) Department of Plant Biology, Michigan State University, 166 Plant Biology Building, East Lansing, MI 48824, USA |
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Abstract: | Background High gene numbers in plant genomes reflect polyploidy and major gene duplication events. Oryza sativa, cultivated rice, is a diploid monocotyledonous species with a ~390 Mb genome that has undergone segmental duplication of a substantial portion of its genome. This, coupled with other genetic events such as tandem duplications, has resulted in a substantial number of its genes, and resulting proteins, occurring in paralogous families. |
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