Genetic polymorphisms of Echinococcus tapeworms in China as determined by mitochondrial and nuclear DNA sequences |
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Authors: | Minoru Nakao Tiaoying Li Xiumin Han Xiumin Ma Ning Xiao Jiamin Qiu Tetsuya Yanagida Hao Wen Patrick Giraudoux Akira Ito |
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Affiliation: | a Department of Parasitology, Asahikawa Medical College, Asahikawa, Hokkaido 078-8510, Japan b Institute of Parasitic Diseases, Sichuan Center for Disease Control and Prevention, Chengdu 610041, China c Qinghai Province Institute for Endemic Disease Control, Xining, Qinghai 811602, China d Department of Parasitology and Microbiology, Xinjiang Medical University, Urumqi 830054, China e Xinjiang Hydatid Clinical Research Institute, The First Affiliated Hospital of Xinjiang Medical University, Urumqi 830054, China f Immunization Safety Office, Division of Healthcare Quality Promotion, Centers for Disease Control and Prevention, Atlanta, GA 30333, USA g Department of Chrono-environment, UMR UFC/CNRS 6249 aff. INRA, Université de Franche-Comté, Besançon, France h Cestode Zoonoses Research Group, Bioscience Research Institute and School of Environment and Life Sciences, University of Salford, Great Manchester M5 4WT, UK |
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Abstract: | The genetic polymorphisms of Echinococcus spp. in the eastern Tibetan Plateau and the Xinjiang Uyghur Autonomous Region were evaluated by DNA sequencing analyses of genes for mitochondrial cytochrome c oxidase subunit 1 (cox1) and nuclear elongation factor-1 alpha (ef1a). We collected 68 isolates of Echinococcus granulosus sensu stricto (s.s.) from Xinjiang and 113 isolates of E. granulosus s. s., 49 isolates of Echinococcus multilocularis and 34 isolates of Echinococcus shiquicus from the Tibetan Plateau. The results of molecular identification by mitochondrial and nuclear markers were identical, suggesting the infrequency of introgressive hybridization. A considerable intraspecific variation was detected in mitochondrial cox1 sequences. The parsimonious network of cox1 haplotypes showed star-like features in E. granulosus s. s. and E. multilocularis, but a divergent feature in E. shiquicus. The cox1 neutrality indexes computed by Tajima’s D and Fu’s Fs tests showed high negative values in E. granulosus s. s. and E. multilocularis, indicating significant deviations from neutrality. In contrast, the low positive values of both tests were obtained in E. shiquicus. These results suggest the following hypotheses: (i) recent founder effects arose in E. granulosus and E. multilocularis after introducing particular individuals into the endemic areas by anthropogenic movement or natural migration of host mammals, and (ii) the ancestor of E. shiquicus was segregated into the Tibetan Plateau by colonising alpine mammals and its mitochondrial locus has evolved without bottleneck effects. |
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Keywords: | Echinococcus Mitochondrial DNA Genetic diversity Population genetic structure China |
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