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Genetic association of the gene encoding RPGRIP1L with susceptibility to vascular dementia
Authors:Woo Jiyoung  Lee Chaeyoung
Institution:School of Systems Biomedical Science, Soongsil University, Seoul 156-743, South Korea.
Abstract:A previous genome-wide association study (GWAS) failed to discover any nucleotide sequence variant associated with susceptibility to vascular dementia (VaD) and remained a problem of false negatives produced by a low statistical power. The current study was conducted to identify such potential false negatives and to provide comprehensive evidence for the most plausible predisposing genetic factor using large-scale Korean cohorts. We identified the gene encoding retinitis pigmentosa GTPase regulator-interacting protein 1-like (RPGRIP1L) with multiple nucleotide variants associated with susceptibility to VaD by a modest significant threshold (P<10(-4)). Genetic associations were intensively examined with its sequence variants using 207 VaD patients and 207 age- and gender-matched control subjects. Genetic association analysis with dense variants in the region associated with VaD revealed 3 variants (P<0.0017) in strong linkage. Further analysis with VaD-related phenotypes using Korean Association REsource (KARE) cohort data showed that the region of the gene was associated with alanine aminotransferase (ALT), aspartate aminotransferase (AST), and blood pressure (BP) (P<7.6×10(-4)). The current study provided the first evidence of the association between RPGRIP1L gene and susceptibility of VaD. Functional studies are needed to understand underlying biological mechanism of the genetic association.
Keywords:AD  Alzheimer's disease  ALT  alanine aminotransferase  AST  aspartate aminotransferase  BP  blood pressure  GWAS  genome-wide association study  KARE  Korean Association REsource  LD  linkage disequilibrium  OR  odds ratio  PCR  polymerase chain reaction  RPGRIP1L  retinitis pigmentosa GTPase regulator-interacting protein 1-like  SNP  single nucleotide polymorphism  VaD  vascular dementia
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