|
|||||
|
|
MamMiBase: a mitochondrial genome database for mammalian phylogenetic studies |
|
| Authors: | Vasconcelos Ana Tereza R de Guimarães Ana Carolina R Castelletti Carlos Henrique M Caruso Célia S Ribeiro Cristina Yokaichiya Fabiano Armôa Geraldo R G Pereira Gislaine da Silva P da Silva Israel T Schrago Carlos G Fernandes Adélia L V da Silveira Aline R Carneiro André G Carvalho Bruno M Viana Carlos J M Gramkow Daniel Lima Franklin J Corrêa Luiz G G Mudado Maurício de A Nehab-Hess Pablo Souza Rangel de Corrêa Régis L Russo Claudia A M |
| Institution: | 1Laboratório Nacional de Computação Científica LNCC/MCT Petrópolis, RJ, Brazil 2Instituto de Bio-Manguinhos, FIOCRUZ Rio de Janeiro, RJ, Brazil 3UFRJ, Departamento de Genética, Instituto de Biologia, Universidade Federal do Rio de Janeiro Rio de Janeiro, RJ, Brazil |
| Abstract: | MamMiBase, the mammalian mitochondrial genome database, is a relational database of complete mitochondrial genome sequences of mammalian species. The database is useful for phylogenetic analysis, since it allows a ready retrieval of nucleotide and aminoacid individual alignments, in three different formats (NEXUS for PAUP program, for MEGA program and for PHYLIP program) of the 13 protein coding mitochondrial genes. The user may download the sequences that are useful for him/her based on their parameters values, such as sequence length, p-distances, base content, transition transversion ratio, gamma, which are also given by MamMiBase. A simple phylogenetic tree (neighbor-joining tree with Jukes Cantor distance) is also available for download, useful for parameter calculations and other simple tasks. AVAILABILITY: MamMiBase is available at http://www.mammibase.lncc.br |
| Keywords: | |
| 本文献已被 PubMed Oxford 等数据库收录！ | |