OrderedList--a bioconductor package for detecting similarity in ordered gene lists |
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Authors: | Lottaz Claudio Yang Xinan Scheid Stefanie Spang Rainer |
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Affiliation: | Department of Computational Molecular Biology, Max Planck Institute for Molecular Genetics Ihnestrasse 63-73, D-14195 Berlin, Germany. |
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Abstract: | SUMMARY: OrderedList is a Bioconductor compliant package for meta-analysis based on ordered gene lists like those resulting from differential gene expression analysis. Our package quantifies the similarity between gene lists. The significance of the similarity score is estimated from random scores computed on perturbed data. OrderedList illustrates list similarity in intuitive plots and determines the score-driving genes for further analysis. AVAILABILITY: http://www.bioconductor.org CONTACT: claudio.lottaz@molgen.mpg.de SUPPLEMENTARY INFORMATION: Please visit our webpage on http://compdiag.molgen.mpg.de/software. |
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