Hawkeye: an interactive visual analytics tool for genome assemblies |
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| Authors: | Michael C Schatz Adam M Phillippy Ben Shneiderman Steven L Salzberg |
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| Affiliation: | (1) Center for Bioinformatics and Computational Biology, University of Maryland, Biomolecular Sciences Building, College Park, Maryland 20742, USA;(2) Department of Computer Science and Human-Computer Interaction Lab, A.V. Williams Building, University of Maryland, College Park, Maryland 20742, USA |
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| Abstract: | Genome sequencing remains an inexact science, and genome sequences can contain significant errors if they are not carefully examined. Hawkeye is our new visual analytics tool for genome assemblies, designed to aid in identifying and correcting assembly errors. Users can analyze all levels of an assembly along with summary statistics and assembly metrics, and are guided by a ranking component towards likely mis-assemblies. Hawkeye is freely available and released as part of the open source AMOS project . |
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