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Plant genome-scale metabolic reconstruction and modelling
Affiliation:1. Key Laboratory of Systems Bioengineering (Ministry of Education), Tianjin University, Tianjin 300072, People''s Republic of China;2. SynBio Research Platform, Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, People''s Republic of China;1. Bioinformatics and Systems Biology Program, University of California, San Diego, United States;2. Department of Bioengineering, University of California, San Diego, United States;3. Department of Pediatrics, University of California, San Diego, United States;4. Novo Nordisk Center for Biosustainability, The Danish Technical University, Denmark;1. Department of Chemical and Biological Engineering, University of Wisconsin-Madison, 1415 Engineering Dr, Madison, WI 53706, United States;2. Great Lakes Bioenergy Research Center, Madison, WI 53706, United States
Abstract:
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  • Highlights► Recent advances have been made on plant genome-scale metabolic reconstruction. ► Cellular compartmentation makes plant genome-scale reconstruction challenging. ► Current reconstructions capture important features of plant metabolism. ► The models have been used to study isolated tissues and tissue interaction. ► We review the challenges and potential of plant reconstruction and modelling.
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