GeneTrack--a genomic data processing and visualization framework |
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Authors: | Albert Istvan Wachi Shinichiro Jiang Cizhong Pugh B Franklin |
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Affiliation: | Huck Institutes for the Life Sciences, Pennsylvania State University, University Park, Pennsylvania, 16802, USA. iual@psu.edu |
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Abstract: | MOTIVATION: High-throughput 'ChIP-chip' and 'ChIP-seq' methodologies generate sufficiently large data sets that analysis poses significant informatics challenges, particularly for research groups with modest computational support. To address this challenge, we devised a software platform for storing, analyzing and visualizing high resolution genome-wide binding data. GeneTrack automates several steps of a typical data processing pipeline, including smoothing and peak detection, and facilitates dissemination of the results via the web. Our software is freely available via the Google Project Hosting environment at http://genetrack.googlecode.com |
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