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An examination of the forms of scatchard plots of binding results outside domains of sigmoidality
Authors:L W Nichol  P R Wills  D J Winzor
Institution:Department of Physical Biochemistry, John Curtin School of Medical Research, Australian National University, Canberra, A.C.T., 2601, Australia;Department of Biochemistry, University of Queensland, St. Lucia, Queensland 4067, Australia
Abstract:General expressions are formulated for the first and second derivatives of the Scatchard function, r/S], with respect to the binding function, r, from an equation that describes the binding of a ligand to a two-state acceptor system (either isomerizing or polymerizing). The expressions are utilized to determine the sign of the second derivative for particular systems under conditions where the first derivative is negative for all r. The work therefore correlates with previous studies, which stressed conditions of existence of critical points in Scatchard plots, by examining more fully possible forms of binding curves outside such domains of sigmoidality. Particular attention is given to the condition, d(r/S])/dr < 0 and d2(r/S])/dr2 > 0 for all r (which defines a Scatchard plot convex to the r-axis). In agreement with previous findings it is proven that the isomerizing acceptor model cannot give rise to this form of plot and is therefore distinguished from negatively co-operative allosteric models. On the other hand, the polymerizing acceptor model may yield such a Scatchard plot, a feature demonstrated by formulating explicit conditions for its manifestation when ligand binding is exclusive to the polymeric state, and illustrated numerically for a system in which ligand binds to both oligomeric states. Distinction between such systems and those exhibiting negative co-operativity is possible on the basis of the Scatchard plots, which exhibit dependence on acceptor concentration in the case of a polymerizing acceptor; indeed, an example is provided where variation of acceptor concentration for a system characterized by fixed interaction parameters effects a conversion from sigmoidal binding behaviour to that typified by a Scatchard plot convex to the r-axis.
Keywords:Address for correspondence: Professor L  W  Nichol  Department of Physical Biochemistry  John Curtin School of Medical Research  Australian National University  Canberra  A  C  T    2601  Australia  
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