primetv: a viewer for reconciled trees |
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| Authors: | Bengt Sennblad Eva Schreil Ann-Charlotte Berglund Sonnhammer Jens Lagergren Lars Arvestad |
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| Affiliation: | (1) Stockholm Bioinformatics Center and Department of Biochemistry and Biophysics, Stockholm University, SE-106 91 Stockholm, Sweden;(2) Stockholm Bioinformatics Center and School of Computer Science and Communication, KTH, SE-100 44 Stockholm, Sweden;(3) Now at Linnaeus Centre for Bioinformatics and Uppsala Multidisciplinary Center for Advanced Computational Science, Uppsala University,BMC, Box 598, SE-751 24 Uppsala, Sweden |
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| Abstract: | Background Evolutionary processes, such as gene family evolution or parasite-host co-speciation, can often be viewed as a tree evolving inside another tree. Relating two given trees under such a constraint is known as reconciling them. Adequate software tools for generating illustrations of tree reconciliations are instrumental for presenting and communicating results and ideas regarding these phenomena. Available visualization tools have been limited to illustrations of the most parsimonious reconciliation. However, there exists a plethora of biologically relevant non-parsimonious reconciliations. Illustrations of these general reconciliations may not be achieved without manual editing. |
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