Identification of consensus RNA secondary structures using suffix arrays |
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Authors: | Mohammad Anwar Truong Nguyen Marcel Turcotte |
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Affiliation: | (1) School of Information Technology and Engineering, University of Ottawa, Ottawa, Ontario, Canada |
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Abstract: | Background The identification of a consensus RNA motif often consists in finding a conserved secondary structure with minimum free energy in an ensemble of aligned sequences. However, an alignment is often difficult to obtain without prior structural information. Thus the need for tools to automate this process. |
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