Species-specific size expansion and molecular evolution of the oleosins in angiosperms |
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Authors: | Qi Liu Yepeng Sun Wujie Su Jing Yang Xiuming Liu Yanfang Wang Fawei Wang Haiyan Li Xiaokun Li |
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Institution: | 1. Ministry of Education Engineering Research Center of Bioreactor and Pharmaceutical Development, Jilin Agricultural University, Changchun, Jilin 130118, China;2. Institute of Genomic Medicine, Wenzhou Medical College, Wenzhou 325035, China;3. School of Pharmaceutical Science/Zhejiang Provincial Key Laboratory of Biotechnology Pharmaceutical Engineering, Wenzhou Medical College, Wenzhou 325035, China |
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Abstract: | Oleosins are hydrophobic plant proteins thought to be important for the formation of oil bodies, which supply energy for seed germination and subsequent seedling growth. To better understand the evolutionary history and diversity of the oleosin gene family in plants, especially angiosperms, we systematically investigated the molecular evolution of this family using eight representative angiosperm species. A total of 73 oleosin members were identified, with six members in each of four monocot species and a greater but variable number in the four eudicots. A phylogenetic analysis revealed that the angiosperm oleosin genes belonged to three monophyletic lineages. Species-specific gene duplications, caused mainly by segmental duplication, led to the great expansion of oleosin genes and occurred frequently in eudicots after the monocot–eudicot divergence. Functional divergence analyses indicate that significant amino acid site-specific selective constraints acted on the different clades of oleosins. Adaptive evolution analyses demonstrate that oleosin genes were subject to strong purifying selection after their species-specific duplications and that rapid evolution occurred with a high degree of evolutionary dynamics in the pollen-specific oleosin genes. In conclusion, this study serves as a foundation for genome-wide analyses of the oleosins. These findings provide insight into the function and evolution of this gene family in angiosperms and pave the way for studies in other plants. |
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Keywords: | BEB Bayes empirical Bayes CAASs critical amino acid sites Dof DNA binding with one finger EST expressed sequence tag GWD genome-wide duplication HMM hidden Markov model Ka nonsynonymous substitution rate Ks synonymous substitution rate ML maximum likelihood Mya million years ago NCBI National Centre for Biotechnology Information NJ neighbor joining Qk posterior probability of divergence TAIR The Arabidopsis Information Resource |
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