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Species-specific size expansion and molecular evolution of the oleosins in angiosperms
Authors:Qi Liu  Yepeng Sun  Wujie Su  Jing Yang  Xiuming Liu  Yanfang Wang  Fawei Wang  Haiyan Li  Xiaokun Li
Institution:1. Ministry of Education Engineering Research Center of Bioreactor and Pharmaceutical Development, Jilin Agricultural University, Changchun, Jilin 130118, China;2. Institute of Genomic Medicine, Wenzhou Medical College, Wenzhou 325035, China;3. School of Pharmaceutical Science/Zhejiang Provincial Key Laboratory of Biotechnology Pharmaceutical Engineering, Wenzhou Medical College, Wenzhou 325035, China
Abstract:Oleosins are hydrophobic plant proteins thought to be important for the formation of oil bodies, which supply energy for seed germination and subsequent seedling growth. To better understand the evolutionary history and diversity of the oleosin gene family in plants, especially angiosperms, we systematically investigated the molecular evolution of this family using eight representative angiosperm species. A total of 73 oleosin members were identified, with six members in each of four monocot species and a greater but variable number in the four eudicots. A phylogenetic analysis revealed that the angiosperm oleosin genes belonged to three monophyletic lineages. Species-specific gene duplications, caused mainly by segmental duplication, led to the great expansion of oleosin genes and occurred frequently in eudicots after the monocot–eudicot divergence. Functional divergence analyses indicate that significant amino acid site-specific selective constraints acted on the different clades of oleosins. Adaptive evolution analyses demonstrate that oleosin genes were subject to strong purifying selection after their species-specific duplications and that rapid evolution occurred with a high degree of evolutionary dynamics in the pollen-specific oleosin genes. In conclusion, this study serves as a foundation for genome-wide analyses of the oleosins. These findings provide insight into the function and evolution of this gene family in angiosperms and pave the way for studies in other plants.
Keywords:BEB  Bayes empirical Bayes  CAASs  critical amino acid sites  Dof  DNA binding with one finger  EST  expressed sequence tag  GWD  genome-wide duplication  HMM  hidden Markov model  Ka  nonsynonymous substitution rate  Ks  synonymous substitution rate  ML  maximum likelihood  Mya  million years ago  NCBI  National Centre for Biotechnology Information  NJ  neighbor joining  Qk  posterior probability of divergence  TAIR  The Arabidopsis Information Resource
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