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Kinetics and Mechanism of the Peptide Synthesis in Solution
Authors:Permyakov  E. A.  Permyakov  S. E.  Medvedkin  V. N.
Affiliation:(1) Russian Academy of Sciences, Institute of Biological Instrumentation, Pushchino, Moscow oblast, 142290, Russia
Abstract:The kinetics of the reaction of Boc-Xaa fluorophenyl esters (where Xaa = Ala, Val, Phe, Ser, Leu, Gly, Met, Pro, or Ile) with leucinamide was studied in order to measure changes in fluorescence emission at 375 nm of the fluorophenyl chromophore accompanying the reaction. It was found that the experimental kinetic data could not be described by a simple scheme of the second order reaction. Measurements of the kinetic parameters of the reaction at various initial concentrations of reagents indicated that the reaction rate can be expressed as: ngr = kCNaCAEb, where k is the reaction rate constant, CN is the concentration of leucinamide, and CAE is the concentration of fluorophenyl ester. The a and b reaction orders were close to 1/2 and 3/2 for Xaa = Ala, Val, Phe, Ser, or Leu, 1/2 and 1 for Gly, Met, or Pro, and 1 and 2 for Ile. The experimental equations for the reaction rate can theoretically be derived from a single scheme of chain reactions with various deactivation ways for active intermediates.
Keywords:fluorescence  mechanism of peptide bond formation  peptide fluorophenyl esters  peptide synthesis  reaction kinetics
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