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Development of a novel data mining tool to find <Emphasis Type="Italic">cis</Emphasis>-elements in rice gene promoter regions |
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| Authors: | Koji Doi Aeni Hosaka Toshifumi Nagata Kouji Satoh Kohji Suzuki Ramil Mauleon Michael J Mendoza Richard Bruskiewich Shoshi Kikuchi |
| Institution: | (1) National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba Ibaraki, 305-8602, Japan;(2) Hitachi Software Engineering Japan Co., Ltd, 6-81 Onoe-cho, Naka-ku Yokohama, 231-0015, Japan;(3) International Rice Research Institute, DAPO 7777 Metro Manila, Philippines |
| Abstract: | BackgroundInformation on more than 35 000 full-length Oryza sativa cDNAs, together with associated microarray gene expression data collected under various treatment conditions, has made it feasible to identify motifs that are conserved in gene promoters and may act as cis-regulatory elements with key roles under the various conditions. |
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