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Missing value imputation improves clustering and interpretation of gene expression microarray data
Authors:Johannes Tuikkala  Laura L Elo  Olli S Nevalainen  Tero Aittokallio
Institution:(1) Department of Information Technology and TUCS, University of Turku, FI-20014 Turku, Finland;(2) Department of Mathematics, University of Turku, FI-20014 Turku, Finland;(3) Turku Centre for Biotechnology, PO Box 123, FI-20521 Turku, Finland;(4) Systems Biology Unit, Institut Pasteur, FR-75724 Paris, France
Abstract:

Background  

Missing values frequently pose problems in gene expression microarray experiments as they can hinder downstream analysis of the datasets. While several missing value imputation approaches are available to the microarray users and new ones are constantly being developed, there is no general consensus on how to choose between the different methods since their performance seems to vary drastically depending on the dataset being used.
Keywords:
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