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Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3)
Authors:Han Cliff  Spring Stefan  Lapidus Alla  Del Rio Tijana Glavina  Tice Hope  Copeland Alex  Cheng Jan-Fang  Lucas Susan  Chen Feng  Nolan Matt  Bruce David  Goodwin Lynne  Pitluck Sam  Ivanova Natalia  Mavromatis Konstantinos  Mikhailova Natalia  Pati Amrita  Chen Amy  Palaniappan Krishna  Land Miriam  Hauser Loren  Chang Yun-Juan  Jeffries Cynthia C  Saunders Elizabeth  Chertkov Olga  Brettin Thomas  Göker Markus  Rohde Manfred  Bristow Jim  Eisen Jonathan A  Markowitz Victor  Hugenholtz Philip  Kyrpides Nikos C  Klenk Hans-Peter  Detter John C
Abstract:Pedobacter heparinus (Payza and Korn 1956) Steyn et al. 1998 comb. nov. is the type species of the rapidly growing genus Pedobacter within the family Sphingobacteriaceae of the phylum 'Bacteroidetes'. P. heparinus is of interest, because it was the first isolated strain shown to grow with heparin as sole carbon and nitrogen source and because it produces several enzymes involved in the degradation of mucopolysaccharides. All available data about this species are based on a sole strain that was isolated from dry soil. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first report on a complete genome sequence of a member of the genus Pedobacter, and the 5,167,383 bp long single replicon genome with its 4287 protein-coding and 54 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.
Keywords:mesophile   strictly aerobic   dry soil   Gram-negative   flexible rods   heparinase producer   Sphingobacteriaceae
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