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Complete genome sequence of Desulfomicrobium baculatum type strain (X)
Authors:Copeland Alex  Spring Stefan  Göker Markus  Schneider Susanne  Lapidus Alla  Del Rio Tijana Glavina  Tice Hope  Cheng Jan-Fang  Chen Feng  Nolan Matt  Bruce David  Goodwin Lynne  Pitluck Sam  Ivanova Natalia  Mavrommatis Konstantinos  Ovchinnikova Galina  Pati Amrita  Chen Amy  Palaniappan Krishna  Land Miriam  Hauser Loren  Chang Yun-Juan  Jeffries Cynthia C  Meincke Linda  Sims David  Brettin Thomas  Detter John C  Han Cliff  Chain Patrick  Bristow Jim  Eisen Jonathan A  Markowitz Victor  Hugenholtz Philip  Kyrpides Nikos C  Klenk Hans-Peter  Lucas Susan
Abstract:Desulfomicrobium baculatum is the type species of the genus Desulfomicrobium, which is the type genus of the family Desulfomicrobiaceae. It is of phylogenetic interest because of the isolated location of the family Desulfomicrobiaceae within the order Desulfovibrionales. D. baculatum strain X(T) is a Gram-negative, motile, sulfate-reducing bacterium isolated from water-saturated manganese carbonate ore. It is strictly anaerobic and does not require NaCl for growth, although NaCl concentrations up to 6% (w/v) are tolerated. The metabolism is respiratory or fermentative. In the presence of sulfate, pyruvate and lactate are incompletely oxidized to acetate and CO(2). Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the first completed genome sequence of a member of the deltaproteobacterial family Desulfomicrobiaceae, and this 3,942,657 bp long single replicon genome with its 3494 protein-coding and 72 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.
Keywords:Sulfate reducer   Gram-negative   free-living   non-pathogenic   freshwater   anaerobe   mesophile   Desulfomicrobiaceae
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