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Molecular docking analysis of flupenthixol and desmethylastemizole with the apoptotic regulator proteins CFLAR and TRAF2 linked to lung carcinoma
Authors:Subrata Das  Anupam Das Talukdar  Rajat Nath  Deepa Nath  Ashikur Rahaman  Shamee Bhattacharjee  Manbendra Dutta Choudhury
Affiliation:1.Department of Life Science and Bioinformatics, Assam University, Silchar-788011, India;2.Department of Zoology, West Bengal State University, Berunanpukuria, Malikapur, North 24 Parganas, Barasat, Kolkata-700126, West Bengal, India;3.Department of Botany, Gurucharan College, Silchar 4, Assam, India
Abstract:It is known that molecular changes in apoptotic genes due to mutation may cause disruption of apoptotic pathway resulting in an abrupt increase in cell proliferation. Therefore, it is of interest to identify compounds that could potentially replenish the changes in the apoptotic pathway, resulted from mutation. The gene network analysis using the Network Analyzer Plugin of Cytoscape (3.5.1) shows CFLAR and TRAF2 as influential genes in the apoptotic pathway. Mutation in these genes brings loss in apoptotic property of a cell and thus increases the cell proliferating activity. Thus, data on the molecular docking analysis of four natural compounds from Ottelia alismoides (L.) Pers with the two target proteins were reported. Flupenthixol and desmethylastemizole was found to be two efficient ligand molecules based on ligand-target interaction. In stereochemical quality assessment, the Ramachandran plot analysis of receptors indicates the better stereochemical characteristics for receptor-ligand interaction.
Keywords:Molecular docking   CFLAR   TRAF2   apoptosis   lung carcinoma   mutation
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