Water-column chlorophyll in an oligotrophic environment: correction for the sampling depths and variations of the vertical structure of density, and observation of a growth period

The chlorophyll content of a water column (WCC), which is commonlyused as an index of the phytoplankton abundance, is affectedby the choice of the sampling depths and by the variations ofthe vertical structure of density. For instance, the thicknessof the water layer, between two sigma-t values, which containsthe deep chlorophyll maximum, can vary with internal waves.The resulting noise often dominates the mesoscale variationsof the observed water-column chlorophyll (OWCC). Sigma-t dependentstatistics (mean, standard deviation) of the chlorophyll concentrationare computed using the observations at 29 casts from a 22-day-longfixed station in an oligotrophic environment at 15•S, 173°E.For each cast, these statistics, the sampling depths, and thewater density at these sampling depths, allow the estimationof a station-dependent ‘expected water-column chlorophyll’(EWCC). The ratio of EWCC to the overall likelihood of WCC duringthe fixed station (i.e. the mean of all OWCC) is a measure ofthe effect of sampling and variable density structure at eachcast. When this effect is removed, the noise in WCC estimatesdecreases significantly. The time variations of WCC during thefixed station then show a trend with relatively high valuesduring the first days, followed by a 12-day-long period withlow values. A regular increase occurred from 1 October, whichwas accompanied by high carbon fixation rates and was mainlydue to an increase of the chlorophyll concentration betweenthe surface and the deep chlorophyll maximum. New productionduring this active phase was estimated to be 535 mgC m^–2day^–1, corresponding to 62% of the total production. Breakingof internal waves which were recorded at the beginning of thegrowth phase and vertical mixing of nutrients can explain theobservation.