COPYCAT: cophylogenetic analysis tool |
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| Authors: | Meier-Kolthoff Jan P Auch Alexander F Huson Daniel H Göker Markus |
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| Institution: | Center for Bioinformatics (ZBIT), Sand 14, Tübingen, Germany. |
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| Abstract: | We have developed the software CopyCat which provides an easy and fast access to cophylogenetic analyses. It incorporates a wrapper for the program ParaFit, which conducts a statistical test for the presence of congruence between host and parasite phylogenies. CopyCat offers various features, such as the creation of customized host-parasite association data and the computation of phylogenetic host/parasite trees based on the NCBI taxonomy. AVAILABILITY: CopyCat and its manual are freely available at http://www-ab.informatik.uni-tuebingen.de/software/copycat. SUPPLEMENTARY INFORMATION: Results of the real-world example can be found at http://www-ab.informatik.uni-tuebingen.de/software/copycat or Bioinformatics online. |
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