Trapping of Mammalian Promoters by Cre-lox Site-Specific Recombination

One of the challenges in human genome research is to identifythe promoter sequences which play a key role in the regulationof gene expression. We report here a new promoter trapping systemfor use with mammalian cells comprised of the following threesteps: 1) Cloning of DNA fragments into a promoter-trappingvector, 2) integration of the trapping vector into a designatedtarget in the mammalian genome using the Cre site-specific recombinase,and 3) screening of integrants for trapped promoter sequencesby activation of the luciferase gene. To assess the efficiencyof this system, lox trapping vectors containing sense tk promoter,antisense tk promoter, or a non-promoter sequence of the neogene were employed. The resulting levels of luciferase activityof the site-specific integrants were measured directly. Luciferaseactivity of the integrants can be assayed under conventionalculture conditions by simply replacing the culture medium withpotassium phosphate buffer containing luciferin. Only thoseG418^r colonies carrying the tk promoter in the normal orientationexhibited a 21- to 35-fold increase in luciferase activity overthat of the other integrants. These results indicate that thissystem is an effective means of trapping promoter sequencesfrom random mammalian genomic DNA fragments.