Agriculture's impact on microbial diversity and associated fluxes of carbon dioxide and methane

Agriculture has marked impacts on the production of carbon dioxide (CO₂) and consumption of methane (CH₄) by microbial communities in upland soils—Earth''s largest biological sink for atmospheric CH₄. To determine whether the diversity of microbes that catalyze the flux of these greenhouse gases is related to the magnitude and stability of these ecosystem-level processes, we conducted molecular surveys of CH₄-oxidizing bacteria (methanotrophs) and total bacterial diversity across a range of land uses and measured the in situ flux of CH₄ and CO₂ at a site in the upper United States Midwest. Conversion of native lands to row-crop agriculture led to a sevenfold reduction in CH₄ consumption and a proportionate decrease in methanotroph diversity. Sites with the greatest stability in CH₄ consumption harbored the most methanotroph diversity. In fields abandoned from agriculture, the rate of CH₄ consumption increased with time along with the diversity of methanotrophs. Conversely, estimates of total bacterial diversity in soil were not related to the rate or stability of CO₂ emission. These combined results are consistent with the expectation that microbial diversity is a better predictor of the magnitude and stability of processes catalyzed by organisms with highly specialized metabolisms, like CH₄ oxidation, as compared with processes driven by widely distributed metabolic processes, like CO₂ production in heterotrophs. The data also suggest that managing lands to conserve or restore methanotroph diversity could mitigate the atmospheric concentrations of this potent greenhouse gas.