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Geoseq: a tool for dissecting deep-sequencing datasets
Authors:James Gurtowski  Anthony Cancio  Hardik Shah  Chaya Levovitz  Ajish George  Robert Homann  Ravi Sachidanandam
Institution:1.Department of Genetics and Genomic Sciences,Mount Sinai School of Medicine,New York,USA;2.International NRW Graduate School in Bioinformatics and Genome Research,Center for Biotechnology (CeBiTec), Bielefeld University,Germany
Abstract:

Background  

Datasets generated on deep-sequencing platforms have been deposited in various public repositories such as the Gene Expression Omnibus (GEO), Sequence Read Archive (SRA) hosted by the NCBI, or the DNA Data Bank of Japan (ddbj). Despite being rich data sources, they have not been used much due to the difficulty in locating and analyzing datasets of interest.
Keywords:
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