Geoseq: a tool for dissecting deep-sequencing datasets |
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Authors: | James Gurtowski Anthony Cancio Hardik Shah Chaya Levovitz Ajish George Robert Homann Ravi Sachidanandam |
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Institution: | 1.Department of Genetics and Genomic Sciences,Mount Sinai School of Medicine,New York,USA;2.International NRW Graduate School in Bioinformatics and Genome Research,Center for Biotechnology (CeBiTec), Bielefeld University,Germany |
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Abstract: | Background Datasets generated on deep-sequencing platforms have been deposited in various public repositories such as the Gene Expression
Omnibus (GEO), Sequence Read Archive (SRA) hosted by the NCBI, or the DNA Data Bank of Japan (ddbj). Despite being rich data
sources, they have not been used much due to the difficulty in locating and analyzing datasets of interest. |
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