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Complete mitochondrial genome of Pycnonotus xanthorrhous (Passeriformes,Pycnonotidae) and phylogenetic consideration
Institution:1. Key Laboratory of Sichuan Institute for Protecting Endangered Birds in the Southwest Mountains, College of Life Sciences, Leshan Normal University, Leshan, Sichuan, 614004, China;2. Department of International Affairs, Leshan Normal University, Leshan, Sichuan, 614004, China;1. Centre for Agricultural Technology Augustenberg (LTZ), Kutschenweg 20, 76287 Rheinstetten-Forchheim, Germany;2. Institute of Crop Science, University of Hohenheim, 70599 Stuttgart, Germany;1. University of Maryland, Baltimore County, Department of Biological Sciences, 1000 Hilltop Circle, Baltimore, MD 21250, USA;2. University of Maryland, Baltimore County, Department of Mathematics and Statistics, 1000 Hilltop Circle, Baltimore, MD 21250, USA;3. University of Canterbury, School of Biological Sciences, Christchurch 8041, New Zealand;4. Australian National Wildlife Collection, CSIRO National Research Collections Australia, GPO Box 1700, Canberra, ACT 2601, Australia;5. Laboratories of Analytical Biology, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20013, USA;1. Institute of Biology, Faculty of Natural Sciences, Martin Luther University Halle-Wittenberg, Heinrich-Damerow Str. 4, 06120 Halle, Germany;1. University of Gothenburg, Department of Biology and Environmental Sciences, Systematics and Biodiversity, Box 463, SE-405 30 Göteborg, Sweden;2. Equipe de Recherche «Valorisation des Ressources Naturelles et Biodiversité», Faculty of Sciences, University Chouaib Doukkali, El Jadida, Morocco;3. Martínez de la Rosa 27 Pral 3ª, 08012 Barcelona, Spain;4. Natural Processes Monitoring Team, Doñana Biological Station – CSIC, C/Americo Vespucio s/n, E-41092 Seville, Spain;5. 2, Route du Radôme, 22560 Pleumeur-Bodou, France;6. Abdelmalek Essaadi University, Faculty of Sciences, Department of Biology, M’Hannech II, 93030 Tétouan, Morocco;7. Department of Animal Ecology, Evolutionary Biology Centre, Uppsala University, Norbyvägen 18 D, SE-752 36 Uppsala, Sweden;8. Swedish Species Information Centre, Swedish University of Agricultural Sciences, Box 7007, SE-750 07 Uppsala, Sweden;9. CESCO, UMR7204 Sorbonne Universités-MNHN-CNRS-UPMC, Centre de Recherches sur la Biologie des Populations d’Oiseaux, CP 135, 43 Rue Buffon, 75005 Paris, France;1. Programa de Pós Graduação em Ecologia, Universidade de Brasília, Brasília, Brazil;2. Programa de Pós Graduação em Botânica, Universidade de Brasília, Brasília, Brazil;3. Laboratório de Comportamento Animal, Universidade de Brasília, Brasília, Brazil
Abstract:The complete mitochondrial genome (mitogenome) of Pycnonotus xanthorrhous was sequenced via next generation sequencing. The full length of the circular genome is 16,952 bp. It consists of 37 typical animal mitochondrial genes including 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) and 2 ribosomal RNA (rRNA) genes. P. xanthorrhous also contains one control region (CR) and one pseudo-control region, and shares the identical gene arrangements with sequenced Pycnonotus spp. which differs from the typical vertebrates gene order. Phylogenetic analyses indicates that Passerida sensu stricto contains three major clades and the core Sylvioidea form a monophyletic group. Furthermore, we investigated the evolution of control region within this lineage and revealed the multiple independent origins of duplicate control region.
Keywords:Pycnonotidae  Mitochondrial genome  Phylogenetic analysis  Gene order  Mitogenome"}  {"#name":"keyword"  "$":{"id":"kwrd0040"}  "$$":[{"#name":"text"  "_":"mitochondrial genome  PCGs"}  {"#name":"keyword"  "$":{"id":"kwrd0050"}  "$$":[{"#name":"text"  "_":"protein-coding genes  tRNA"}  {"#name":"keyword"  "$":{"id":"kwrd0060"}  "$$":[{"#name":"text"  "_":"transfer RNA  rRNA"}  {"#name":"keyword"  "$":{"id":"kwrd0070"}  "$$":[{"#name":"text"  "_":"ribosomal RNA  CR"}  {"#name":"keyword"  "$":{"id":"kwrd0080"}  "$$":[{"#name":"text"  "_":"control region  ORF"}  {"#name":"keyword"  "$":{"id":"kwrd0090"}  "$$":[{"#name":"text"  "_":"open reading frame  AIC"}  {"#name":"keyword"  "$":{"id":"kwrd0100"}  "$$":[{"#name":"text"  "_":"Akaike information criterion  ML"}  {"#name":"keyword"  "$":{"id":"kwrd0110"}  "$$":[{"#name":"text"  "_":"maximum likelihood  BI"}  {"#name":"keyword"  "$":{"id":"kwrd0120"}  "$$":[{"#name":"text"  "_":"Bayesian inference  CSB"}  {"#name":"keyword"  "$":{"id":"kwrd0130"}  "$$":[{"#name":"text"  "_":"conserved sequence block
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