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Phylogenetic analyses and evolutionary timescale of Coleoptera based on mitochondrial sequence
Affiliation:1. School of Life Sciences, Datong University, Datong, China;2. College of Life Science, Shaanxi Normal University, Xi''an, China;1. Department of Pain Management, The Affiliated Hospital of Qingdao University, Qingdao 266003, China;2. Department of Anesthesiology, The Affiliated Hospital of Qingdao University, Qingdao 266003, China;3. Chinese Traditional Patent Medicine Dispensary, The Affiliated Hospital of Qingdao University, Qingdao 266003, China;1. Ioffe Institute, ul. Polytechnitscheskaya 26, St.-Petersburg, 194021, Russia;2. Tambov State Technical University, ul. Sovetskaya 106, Tambov, 392000, Russia;1. Laboratorio de Química Física y Catálisis Computacional, Centro de Química, Instituto Venezolano de Investigaciones Científicas, Apartado, 21827 Caracas, Venezuela;2. Laboratorio de Físico Química Teórica de Materiales, Centro de Química, Instituto Venezolano de Investigaciones Científicas, Apartado, 21827 Caracas, Venezuela;3. Instituto Universitario de Tecnología de Valencia IUTVAL, Valencia, Edo. Carabobo, Venezuela
Abstract:
Coleopteran phylogeny was analysed using mitochondrial genome (mitogenome) sequence. The optimal tree topology was given by the dataset consisted of all coding genes except for the exclusion of the 3rd codon sites (mtDNA12) using Bayesian Inference Method. This topology supports the monophyly of four suborders, and the sister group relationship between Adephaga and Myxophaga and between Polyphaga and Archostemata. In Polyphaga, Cucujiformia and Elateroidea formed independent node respectively, the remaining species grouped together except for Cyphon sp, among which, only Cucujiformia and Scarabaeiformia were supported as monophyletic group, respectively. Within Cucujiformia, the monophyly of Chrysomeloidea, Curculionoidea and Tenebrionoidea were supported respectively, among which Tenebrionoidea occupied the basal position of Cucujiformia. Cleroidea grouped together with Bothrideridae and Coccinellidae, and formed an independent node, which lead to the paraphyly of Cucujoidea. The monophyly of Elateriformia was not supported because of the division of Scirtoidea and Buprestoidea. Furthermore, using a Bayesian relaxed clock calibrated with fossil data, we estimated that most superfamilies within Polyphaga originated in the Jurassic period.
Keywords:Coleoptera  Polyphaga  Mitogenome  Phylogeny  Divergence time  Mitogenome"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kwrd0040"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  mitochondrial genome  BI"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kwrd0050"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  Bayesian inference  ML"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kwrd0060"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  maximum likelihood  PCGs"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kwrd0070"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  protein coding genes  tRNA"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kwrd0080"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  transfer RNA  rRNA"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kwrd0090"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  ribosomal RNA  NADH dehydrogenase subunits 1–6 and 4L  ATPase subunits 6 and 8  cytochrome b  large and small subunits ribosomal RNA  T - stretch"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kwrd0150"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  polythymine stretch  DHU arm"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kwrd0160"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  dihydrouridine arm
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