Rational Design and Cyclization of MIG6 Peptide to Restore its Binding Affinity for ErbB Family Receptor Tyrosine Kinases

The ErbB receptor tyrosine kinase family consists of four members: EGFR/Her1, Her2, Her3 and Her4; they have been involved in a variety of malignant tumors. The mitogen-inducible gene 6 (MIG6) is a natural tumor-suppressor protein that can inactivate ErbB signaling by directly binding to the catalytic domain of ErbB kinases. Here, a peptide segment s2p was stripped from the MIG6 interaction interface with ErbB, which exhibited a very low or no affinity to the four ErbB kinases. Structural dynamics simulations revealed that the linear peptide is highly flexible in unbound state and would incur a considerable entropy penalty upon binding to kinases. In this respect, the s2p peptide was cyclized by rational design of a disulfide bond across its two termini, resulting in a cyclic peptide s2p-c. Integration of computational analysis and experimental assay found that the cyclization can largely constrain s2p conformation, thus minimizing the entropy penalty and restoring the binding affinity of s2p-c to kinases.