VMD DisRg: New User-Friendly Implement for calculation distance and radius of gyration in VMD program |
| |
| Authors: | Falsafi-Zadeh Sajad Karimi Zahra Galehdari Hamid |
| |
| Institution: | 1Bioinformatics unit, Department of Genetics, Shahid Chamran University, Ahvaz, Iran;2Department of Genetics, Shahid Chamran University, Ahvaz, Iran |
| |
| Abstract: | Molecular dynamic simulation is a practical and powerful technique for analysis of protein structure. Several programs have been
developed to facilitate the mentioned investigation, under them the visual molecular dynamic or VMD is the most frequently used
programs. One of the beneficial properties of the VMD is its ability to be extendable by designing new plug-in. We introduce here a
new facility of the VMD for distance analysis and radius of gyration of biopolymers such as protein and DNA.AvailabilityThe database is available for free at http://trc.ajums.ac.ir/HomePage.aspx/?TabID/=12618/&Site/=trc.ajums.ac/&Lang/=fa-IR |
| |
| Keywords: | VMD plug-in radius of gyration distance center of mass |
| 本文献已被 PubMed 等数据库收录！ |
|
