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Molecular dynamics simulation studies on influenza A virus H5N1 complexed with sialic acid and fluorinated sialic acid
Authors:R A Jeyaram  T R K Priyadarzini  C Anu Radha  N R Siva Shanmugam  C Ramakrishnan  M Michael Gromiha
Institution:1. Research Laboratory of Molecular Biophysics, Department of Physics, School of Advanced Sciences, Vellore Institute of Technology, Vellore, India;2. Department of Physics, The American College, Madurai, India;3. Department of Biotechnology, Indian Institute of Technology, Madras, Chennai, India
Abstract:Abbreviations HA Hemagglutinin

MD Molecular Dynamics

MM-PBSA Molecular Mechanics Poisson–Boltzmann Surface Area

NA Neuraminidase

NAMD Nanoscale Molecular Dynamic Simulation

PMEMD Particle Mesh Ewald Molecular Dynamics

RMSD Root-Mean-Square Deviation

RMSF Root-Mean-Square Fluctuation

SIA sialic acid

VMD Visual Molecular Dynamics

Communicated by Ramaswamy H. Sarma
Keywords:
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