Complete nucleotide sequence of plasmid pND6-2 from Pseudomonas putida ND6 and characterization of conjugative genes |
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| Authors: | Shanshan Li Huabing Zhao Yaxiao Li Shumin Niu Baoli Cai |
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| Affiliation: | 1. Tianjin Key Laboratory of Biomarkers for Occupational and Environmental Hazard, Logistics University of Chinese People''s Armed Police Forces, Tianjin 300162, China;2. Department of Environmental Science and Engineering, Xi''an Jiaotong University, Xi''an 710049, China;3. Department of Microbiology, Nankai University, Tianjin 300071, China |
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| Abstract: | |
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| Keywords: | AMP, adenosine monophosphate Ampr, ampicillin-resistant AMPSase, adenylosuccinate synthetase BLAST, basic local alignment search tool bp, base pair ° C, celcius degree cAMP, cyclic adenosine monophosphate CDSs, coding sequences C5 Mtase, C-5 cytosine-specific DNA methylases DNA, deoxyribonucleic acid dNTP, deoxyribonucleoside triphosphate dtr, DNA transfer and replication E. coli, Escherichia coli eggNOG, evolutionary genealogy of genes: non-supervised orthologous groups EMBOSS, European Molecular Biology Open Software Suite E-value, expect value GDP, guanosine diphosphate GTP, guanosine triphosphate Halomonas sp., Halomonas species IMP, inosine monophosphate Inc, incompatibility IS, insertion sequence kb, kilobases LB, luria bertani L. pneumophila, Legionella pneumophila min, minute ml, milliliter mm, millitmeter mM, millimole/liter mpf, mating pair formation NCBI, National Center for Biotechnology Information nm, nanometer Orf, open reading frame oriT, transfer origin oriV, replication origin P. aeruginosa, Pseudomonas aeruginosa PBS, phosphate-buffered saline PCR, polymerase chain reaction PDIs, protein disulfide isomerases P. fluorescens, Pseudomonas fluorescens Pi, inorganic phosphate PolV, DNA polymerase V P. putida, Pseudomonas putida P. resinovorans, Pseudomonas resinovorans Psedomonas sp., Psedomonas species rpm, rotation per minute s, second Sal, salicylate SOAP, short oligonucleotide alignment program SSB protein, single-strand binding protein ssDNA, single-stranded DNA Taq, thermophilus aquaticus Tetr, tetracycline-resistance TLS polymerase, translesion synthesis polymerase U, unit μg, microgram μl, microliter μm, micrometer μM, micromole/liter UV, ultraviolet |
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