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Evolutionary patterns of the mitochondrial genome in the Moorish gecko, Tarentola mauritanica
Authors:C Rato  S Carranza  A Perera  DJ Harris
Institution:1. CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Campus Agrário de Vairão, 4485‐661 Vairão, Portugal;2. Departamento de Biologia, Faculdade de Ciências da Universidade do Porto, 4099‐002 Porto, Portugal;3. Instituto de Biologia Evolutiva (CSIC-UPF), Passeig Marítim de la Barceloneta, 37‐49, E-08003 Barcelona, Spain
Abstract:A previous study on the evolutionary patterns of Tarentola mauritanica demonstrated that low levels of mitochondrial diversity observed in the European populations relative to nuclear markers were consistent with a selective sweep hypothesis. In order to unravel the mitochondrial evolutionary history in this European population and two other lineages of T. mauritanica (Iberian and North African clades), variation within 22 nearly complete mitogenomes was analyzed. Surprisingly, each clade seems to have a distinct evolutionary history; with both the European and Iberian clades presenting a decrease of polymorphism, which in the former is consistent with departure from neutrality of the mtDNA (positive or background selection), but in the latter seems to be the result of a bottleneck after a population expansion. The pattern exhibited by the North African clade seems to be a consequence of adaptation to certain mtDNA variants by positive selection.
Keywords:Ala  Alanine  Asn  Asparagine  Asp  Aspartic acid  Arg  Arginine  ATP6  ATP synthase 6  ATP8  ATP synthase 8  bp  Base pair  COXI  Cytochrome c oxidase 1  COXII  Cytochrome c oxidase 2  COXIII  Cytochrome c oxidase 3  Cys  Cysteine  CYTB  Cytochrome b  dNTP  Deoxyribonucleoside triphosphate  Gln  Glutamine  Glu  Glutamic acid  Gly  Glycine  HKA test  Hudson  Kreitman and Aguadé  test  His  Histidine  Ile  Isoleucine  Leu  Leucine  Lys  Lysine  Met  Methionine  MgCl2  Magnesium chloride  MLHKA  Maximum likelihood version of the HKA test  mtDNA  Mitochondrial DNA  ND1  NADH dehydrogenase 1  ND2  NADH dehydrogenase 2  ND3  NADH dehydrogenase 3  ND4  NADH dehydrogenase 4  ND4L  NADH-ubiquinone oxidoreductase chain 4L  ND5  NADH dehydrogenase 5  ND6  NADH dehydrogenase 6  Numt  Nuclear mitochondrial DNA  PCR  Polymerase chain reaction  Phe  Phenylalanine  Pro  Proline  rRNA  Ribosomal RNA  Ser  Serine  Thr  Threonine  tRNA  Transfer RNA genes  Trp  Tryptophan  Tyr  Tyrosine  Val  Valine
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