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Evolutionary patterns of the mitochondrial genome in the Moorish gecko, Tarentola mauritanica
Authors:C. Rato  S. Carranza  A. Perera  D.J. Harris
Affiliation:1. CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Campus Agrário de Vairão, 4485‐661 Vairão, Portugal;2. Departamento de Biologia, Faculdade de Ciências da Universidade do Porto, 4099‐002 Porto, Portugal;3. Instituto de Biologia Evolutiva (CSIC-UPF), Passeig Marítim de la Barceloneta, 37‐49, E-08003 Barcelona, Spain
Abstract:A previous study on the evolutionary patterns of Tarentola mauritanica demonstrated that low levels of mitochondrial diversity observed in the European populations relative to nuclear markers were consistent with a selective sweep hypothesis. In order to unravel the mitochondrial evolutionary history in this European population and two other lineages of T. mauritanica (Iberian and North African clades), variation within 22 nearly complete mitogenomes was analyzed. Surprisingly, each clade seems to have a distinct evolutionary history; with both the European and Iberian clades presenting a decrease of polymorphism, which in the former is consistent with departure from neutrality of the mtDNA (positive or background selection), but in the latter seems to be the result of a bottleneck after a population expansion. The pattern exhibited by the North African clade seems to be a consequence of adaptation to certain mtDNA variants by positive selection.
Keywords:Ala, Alanine   Asn, Asparagine   Asp, Aspartic acid   Arg, Arginine   ATP6, ATP synthase 6   ATP8, ATP synthase 8   bp, Base pair   COXI, Cytochrome c oxidase 1   COXII, Cytochrome c oxidase 2   COXIII, Cytochrome c oxidase 3   Cys, Cysteine   CYTB, Cytochrome b   dNTP, Deoxyribonucleoside triphosphate   Gln, Glutamine   Glu, Glutamic acid   Gly, Glycine   HKA test, Hudson, Kreitman and Aguadé   test   His, Histidine   Ile, Isoleucine   Leu, Leucine   Lys, Lysine   Met, Methionine   MgCl2, Magnesium chloride   MLHKA, Maximum likelihood version of the HKA test   mtDNA, Mitochondrial DNA   ND1, NADH dehydrogenase 1   ND2, NADH dehydrogenase 2   ND3, NADH dehydrogenase 3   ND4, NADH dehydrogenase 4   ND4L, NADH-ubiquinone oxidoreductase chain 4L   ND5, NADH dehydrogenase 5   ND6, NADH dehydrogenase 6   Numt, Nuclear mitochondrial DNA   PCR, Polymerase chain reaction   Phe, Phenylalanine   Pro, Proline   rRNA, Ribosomal RNA   Ser, Serine   Thr, Threonine   tRNA, Transfer RNA genes   Trp, Tryptophan   Tyr, Tyrosine   Val, Valine
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