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An automated annotation tool for genomic DNA sequences using GeneScan and BLAST |
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| Authors: | Andrew M Lynn Chakresh Kumar Jain K Kosalai Pranjan Barman Nupur Thakur Harish Batra Alok Bhattacharya |
| Institution: | (1) Bioinformatics Centre, Jawaharlal Nehru University, 110 067 New Delhi, India;(2) School of Life Sciences, Jawaharlal Nehru University, 110 067 New Delhi, India |
| Abstract: | Genomic sequence data are often available well before the annotated sequence is published. We present a method for analysis of genomic DNA to identify coding sequences using the GeneScan algorithm and characterize these resultant sequences by BLAST. The routines are used to develop a system for automated annotation of genome DNA sequences. |
| Keywords: | GeneScan BLAST genome annotation DNA sequence computational genomics Fourier analysis |
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