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Polymorphisms and phenotypic analysis of cytochrome P450 2D6 in the Tibetan population
Authors:Tian-Bo Jin  Li-Feng Ma  Jia-Yi Zhang  Dong-Ya Yuan  Qiang Sun  Ting-Yong Zong  Ting-Ting Geng  Ya-Li Cui  Long-Li Kang  Chao Chen
Institution:1. Key Laboratory of High Altitude Environment and Genes Related to Diseases of Tibet Autonomous Region, School of Medicine, Tibet University for Nationalities, Xianyang, Shaanxi 712082, China;2. National Engineering Research Center for Miniaturized Detection Systems, School of Life Sciences, Northwest University, Xi''an, Shaanxi 710069, China;3. Shaanxi Lifegen Co. Ltd., Xi''an, Shaanxi 710069, China;4. GoldMag Co. Ltd., Xi''an, Shaanxi 710069, China
Abstract:The cytochrome P450 2D6 enzyme (CYP2D6) metabolizes about 25% of prescribed drugs in the endoplasmic reticulum, and genetic polymorphisms in CYP2D6 can greatly affect its activity and lead to differences among individuals in drug efficacy and adverse drug reactions. To investigate genetic polymorphisms in CYP2D6 among Tibetan Chinese, we directly sequenced the whole gene in 96 unrelated, healthy Tibetans from The Tibet Autonomous Region of China and screened for genetic variants in the promoter, exons, introns, and 3′UTR. We detected fifty-one genetic polymorphisms in CYP2D6, and 16 of them are novel. The allele frequencies of CYP2D6*1, *2, *5, *10, *41, and *49 were 0.25, 0.43, 0.02, 0.29, 0.02, and 0.01, respectively. The frequency of CYP2D6*10, a putative poor-metabolizer allele, was lower in our sample population compared with that in the Han Chinese population (p < 0.001). In addition, haplotype analysis allowed 15 CYP2D6 haplotypes to be classified into three groups. In conclusion, our results provide basic information about CPY2D6 alleles in Tibetans and suggest that the enzymatic activities of CYP2D6 may differ among the diverse ethnic populations of China. Our results provide a basis for safer drug administration and better therapeutic treatment among Tibetans.
Keywords:bp  base pair(s)  CYP  cytochrome P450  DNA  deoxyribonucleic acid  EM  extensive metabolizer  LD  linkage disequilibrium  LOD  log odds score  MAF  minor allele frequency  min  minute  PCR  Polymerase Chain Reaction  PM  poor metabolizer  s  second  SNP  single nucleotide polymorphisms  UM  ultra-rapid metabolizer  UTR  untranslated region(s)
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