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The okra (Abelmoschus esculentus) transcriptome as a source for gene sequence information and molecular markers for diversity analysis
Authors:Roland Schafleitner  Sanjeet Kumar  Chen-yu Lin  Satish Gajanana Hegde  Andreas Ebert
Affiliation:1. AVRDC — The World Vegetable Center, P.O. Box 42, Shanhua, Tainan 74199, Taiwan;2. Bioseed Research India Pvt. Ltd., 206, Road No. 14, Jubilee Hills, Hyderabad 500 033, India
Abstract:
Keywords:ACC-oxidase, aminocyclopropanecarboxylate oxidase   bp, base pair   COG, Clusters of Orthologous Groups   CTAB, cetyl trimethylammonium bromide   dNTP, deoxyribonucleotide triphosphate   EDTA, ethylenediaminetetraacetic acid   EST, expressed sequence tag   E-value, Expect-value   Ha, hectare   KEGG, Kyoto Encyclopedia of Genes and Genomes   NADH, reduced form of nicotinamide-adenine dinucleotide   NCBI, National Center for Biotechnology Information   Nr, non-redundant   ORF, open reading frame   PCR, polymerase chain reaction   PIC, polymorphic information content   RAPD, random amplified polymorphic marker   RPMK, reads per kb exon model per million uniquely mapping reads   SRA, NCBI Short Read Archive   SRAP, sequence related amplified polymorphism   SSR, simple sequence repeat   T, tons   Tris, tris(hydroxymethyl)aminomethane   UPGMA, unweighted pair group method average   USDA, United States Department of Agriculture
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