首页 | 本学科首页   官方微博 | 高级检索  
     


Unraveling microalgal molecular interactions using evolutionary and structural bioinformatics
Authors:Dimitrios Vlachakis  Athanasia PavlopoulouDorothea Kazazi  Sophia Kossida
Affiliation:Bioinformatics & Medical Informatics Team, Biomedical Research Foundation, Academy of Athens, Soranou Efessiou 4, Athens 11527, Greece
Abstract:Microalgae are unicellular microorganisms indispensible for environmental stability and life on earth, because they produce approximately half of the atmospheric oxygen, with simultaneously feeding on the harmful greenhouse gas carbon dioxide. Using gene fusion analysis, a series of five fusion/fission events was identified, that provided the basis for critical insights to their evolutionary history. Moreover, the three-dimensional structures of both the fused and the component proteins were predicted, allowing us to envisage putative protein–protein interactions that are invaluable for the efficient usage, handling and exploitation of microalgae. Collectively, our proposed approach on the five fusion/fission alga protein events contributes towards the expansion of the microalgae knowledgebase, bridging protein evolution of the ancient microalgal species and the rapidly evolving, modern, bioinformatics field.
Keywords:CO2, Carbon dioxide   SAFE, Software for the Analysis of Fusion Events   3D, Three-dimensional   BLAST, Basic Local Alignment Search Tool   Fra10Ac1, Fragile site, folic acid type, rare, fra(10)(q23.3) or fra(10)(q24.2) candidate 1   DOT1, Disruptor of Telomeric silencing   COX2A, cytochrome c oxidase subunit II, transmembrane domain   COX2B, cytochrome c oxidase subunit II C-terminal   G6PDH, glucose-6-phosphate 1-dehydrogenase   TIM, Triosephosphate isomerase   6PGDH, 6-phosphogluconate dehydrogenase   GAPDH, glyceraldehyde-3-phosphate dehydrogenase   DMRL, 6,7-dimethyl-8-(1&prime  -d-ribityl)-lumanizine   G3P, d-Glyceraldehyde 3-phosphate   DHAP, dihydroxyacetone phosphate   PDB, Protein Data Bank   RNA, Ribonucleic acid   NCBI, National Center for Biotechnology Information   ATP, Adenosine triphosphate   WD, Trp-Asp   SH3, Src homology 3 domain   NPS, Network Protein Sequence Analysis   MOE, Molecular Operating Environment   MEP, Molecular electrostatic potential   NVT, Number of atoms, Volume and Temperature   RMSD, Root-mean-square deviation
本文献已被 ScienceDirect 等数据库收录!
设为首页 | 免责声明 | 关于勤云 | 加入收藏

Copyright©北京勤云科技发展有限公司  京ICP备09084417号