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A 1.1 Mb deletion in distal 13q deletion syndrome region with congenital heart defect and postaxial polydactyly: Additional support for a CHD locus at distal 13q34 region
Authors:Yi-Feng Yang  Qi Ai  Can Huang  Jin-Lan Chen  Jian Wang  Li Xie  Wei-Zhi Zhang  Jin-Fu Yang  Zhi-Ping Tan
Institution:1. Department of Cardiothoracic Surgery, The Second Xiangya Hospital, Central South University, Changsha, Hunan, China;2. Clinical Center for Gene Diagnosis and Therapy of State Key Laboratory of Medical Genetics, The Second Xiangya Hospital, Central South University, Changsha, Hunan, China
Abstract:13q deletion syndrome is a rare genetic disorder, especially for group 3 deletion (13q33–q34 deletion). Previously we described a patient with congenital heart defect and mental retardation and proposed that a distal 6 Mb region might contain the causative gene of congenital heart defect. Here we present a new patient with congenital heart defects (CHD), hand and foot anomalies and mild mental retardation. We identified a 1.1 Mb deletion at chromosome 13q34 with high resolution SNP-array BeadChips (HumanOmni1-Quad, Illumina, USA). This chromosome region contains ten annotated genes, including GRK1, TFDP1, RASA3 and GAS6. To our knowledge, this represents the smallest 13q34 deletion identified to date. Our study provides additional support that distal 13q34 deletion region might contain key gene(s) responsible for cardiac development.
Keywords:CNV  copy number variation  CHD  congenital heart defects  SNP  single nucleotide polymorphism  CGH-array  comparative genomic hybridization array  PCR  polymerase chain reaction  IQ  Intelligence quotient  OMIM  Online Mendelian Inheritance in Man  Hg19  human genome 19  SA  single atrium  PPA  postaxial polydactyly  DGV  Database of Genomic Variants
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