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Microsatellite markers uncover cryptic species of Odontotermes (Termitoidae: Termitidae) from Peninsular Malaysia
Authors:S. Cheng  C.T. Lee  M.N. Wan  S.G. Tan
Affiliation:1. Genetics Laboratory, Forest Research Institute Malaysia (FRIM), 52109 Kepong, Selangor, Malaysia;2. Recreational Impact and Management Branch, FRIM, 52109 Kepong, Selangor, Malaysia;3. Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400 Serdang, Selangor, Malaysia
Abstract:Termites from the genus Odontotermes are known to contain numerous species complexes that are difficult to tell apart morphologically or with mitochondrial DNA sequences. We developed markers for one such cryptic species complex, that is, Odontotermes srinakarinensis sp. nov. from Maxwell Hill Forest Reserve (Perak, Malaysia), and characterised them using a sample of 41 termite workers from three voucher samples from the same area. We then genotyped 150 termite individuals from 23 voucher samples/colonies of this species complex from several sites in Peninsular Malaysia. We analysed their population by constructing dendograms from the proportion of shared-alleles between individuals and genetic distances between colonies; additionally, we examined the Bayesian clustering pattern of their genotype data. All methods of analysis indicated that there were two distinct clusters within our data set. After the morphologies of specimens from each cluster were reexamined, we were able to separate the two species morphologically and found that a single diagnostic character found on the mandibles of its soldiers could be used to separate the two species quite accurately. The additional species in the clade was identified as Odontotermes denticulatus after it was matched to type specimens at the NHM London and Cambridge Museum of Zoology.
Keywords:bp, base pair(s)   CD-Hit, Cluster Database at High Identity with Tolerance   F.R., Forest Reserve   FIS, inbreeding coefficient of an individual relative to the subpopulation   FIT, inbreeding coefficient of an individual relative to the total population   FRIM, Forest Research Institute Malaysia   FST, fixation index   He, expected heterozygosity   Ho, observed heterozygosity   HWE, Hardy&ndash  Weinberg equilibrium   LB, Luria&ndash  Bertani (medium)   MISA, Microsatellite Identification tool   mtDNA, mitochondrial DNA   NHM, Natural History Museum   NJ, neighbour-joining   PCR, polymerase chain reaction   STR, short tandem repeat   UPGMA, unweighted paired group method with arithmetic mean   X-gal, 5-Bromo-4-chloro-3-indolyl-β-d-galactoside
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